Locus 8650

Sequence ID X_DroMel_CAF1
Location 21,835,446 – 21,835,536
Length 90
Max. P 0.588772
window14213

overview

Window 3

Location 21,835,446 – 21,835,536
Length 90
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 83.20
Mean single sequence MFE -30.68
Consensus MFE -18.70
Energy contribution -19.82
Covariance contribution 1.12
Combinations/Pair 1.09
Mean z-score -1.93
Structure conservation index 0.61
SVM decision value 0.11
SVM RNA-class probability 0.588772
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21835446 90 + 22224390
AAUUAGCAUGAGCGACUA-GCCAAGCGAGAGCGGCAA-AGUUGCCGCUAAUCAAGUUGGAGGUCAGUU-------UGUCGUCUGUCGGUUGGCAGAC-------UU
.....((....))..((.-(((((.(((.((((((((-(.(.(((.(((((...))))).))).).))-------))))).)).))).)))))))..-------.. ( -34.90)
>DroSec_CAF1 9908 97 + 1
AAUUAGCAUGAGCGACUA-GCCAAGCGAGAGUGGCAA-AGUUGCCGCUAAUCAAGUUGGAGGUCAGUUCGACAGUUGUCGUCUGUCAGUUGGCAGAC-------AU
.........((((((((.-.((((..((.(((((((.-...)))))))..))...)))).)))).))))(((....)))(((((((....)))))))-------.. ( -35.90)
>DroEre_CAF1 6240 97 + 1
AAUUAGCAUGAGAGACUA-GCCAAGCGAGAGCUGCAA-AGUUGCCGCUAAUCAAGUUGGAGGUCAGUUCGACAGUUGUCGUCUGUCCGUUGGCAGAC-------UU
.((((((..(...((((.-((..(((....)))))..-)))).).))))))...((..(.((.(((..((((....)))).))).)).)..))....-------.. ( -28.30)
>DroYak_CAF1 6453 97 + 1
AAUUAGCAUAAGCGACUA-GCCAAGAGAGAGCUGCAA-AGUUGCCGCUAAUCAAGUUGGAGGUCAGUUCGACAGUUGUCGUCUGUCAGUGGACAGAC-------UU
.....((....))((((.-.((((((...(((.(((.-...))).)))..))...)))).)))).....(((....)))(((((((....)))))))-------.. ( -29.80)
>DroAna_CAF1 5002 99 + 1
AAUUAGCAUCAGCGACUAAGCCAAGUGAGAGCUGCAAAAACUGCCGCUAAUCAAGUUGGAGGUCAGUUCGGCAGUUGGCA-------AAUGACAGACACAGAGACU
.....((....))......(((((.((.((((((........(((.(((((...))))).)))))))))..)).))))).-------................... ( -24.50)
>consensus
AAUUAGCAUGAGCGACUA_GCCAAGCGAGAGCUGCAA_AGUUGCCGCUAAUCAAGUUGGAGGUCAGUUCGACAGUUGUCGUCUGUCAGUUGGCAGAC_______UU
.............((((...((((..((.(((.(((.....))).)))..))...)))).))))...............(((((((....)))))))......... (-18.70 = -19.82 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:21 2006