| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,821,523 – 21,821,637 |
| Length | 114 |
| Max. P | 0.999468 |
| Location | 21,821,523 – 21,821,637 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.52 |
| Mean single sequence MFE | -23.63 |
| Consensus MFE | -15.93 |
| Energy contribution | -17.06 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.67 |
| SVM decision value | 3.63 |
| SVM RNA-class probability | 0.999468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21821523 114 - 22224390 AAAAUUGAAGUAUUGCAGAAAUUAUCAACAA-AAGGUCACAAUUAAGGUGACCUUUUUUAAUUUAUUUUCAGCUUUUUCAAUUCAAAGAUCUAUAAUCUUGGCCACAUCUAUAAA ..((((((((....((.((((.((.....((-((((((((.......))))))))))......)).)))).))..))))))))..(((((.....)))))............... ( -23.40) >DroSim_CAF1 30630 110 - 1 AAAAUUUACGUAUUGCUGAAAUUAUCAACAAAAAGGUCACAAUG-----GACCUUUUUUAAUUUAUUUUCAGUGAAAGCCAUUCAAAGAGCUAUAAUCUUGGCCACAUCUAUAAA .........((.(..((((((.((.....(((((((((......-----))))))))).....)).))))))..)..((((.....(((.......))))))).))......... ( -24.00) >DroEre_CAF1 34936 105 - 1 UAAUUUUACGCAUUGCAGAAAUGAUCAAUAAGAGGGUUACAAUUCAUGUGACCUUUUGUACUUUGUUUCCUGUGA----------AAGAUCUAUAAUCUUGGCCACAUCUAUAUA .........((.(..((((((..(......(((((((((((.....))))))))))).....)..))).)))..)----------(((((.....))))).))............ ( -23.50) >consensus AAAAUUUACGUAUUGCAGAAAUUAUCAACAA_AAGGUCACAAUU_A_GUGACCUUUUUUAAUUUAUUUUCAGUGA___C_AUUCAAAGAUCUAUAAUCUUGGCCACAUCUAUAAA .........((...(((((((........(((((((((((.......)))))))))))........)))))))............(((((.....))))).))............ (-15.93 = -17.06 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:19 2006