| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,718,756 – 21,718,847 |
| Length | 91 |
| Max. P | 0.887816 |
| Location | 21,718,756 – 21,718,847 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.16 |
| Mean single sequence MFE | -25.52 |
| Consensus MFE | -12.28 |
| Energy contribution | -13.95 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21718756 91 + 22224390 -------------UUUUUUUUGCAG----UUGUGUGUUGAAGUGAAAUGGAAUUUGUUGAAUUUUAAUUGCACGCAGC---AC--GCUGCCGGCGAAAACAACAGCAAAA-UUA- -------------....((((((.(----((((.(((((..(((((.((((((((...)))))))).)).)))((((.---..--.)))))))))...))))).))))))-...- ( -25.80) >DroVir_CAF1 14841 96 + 1 -------------UUU-UUUUGUUGUUGUGUGUGUCUUAAAGUGAAAUGGAAUUUGUUGAAUUUUAAUUGCACGCAGC---UUCAGCUGAGAGC-AGAGCAGCAGAAAAAGACA- -------------(((-((((((((((.(((((((.(((((((..((..(...)..))..)))))))..)))).((((---....))))...))-).)))))))))))))....- ( -29.40) >DroGri_CAF1 15621 94 + 1 -------------UUG-UUUUGUGCAUGUGUGUGAGUUAAAGUGAAAUGGAAUUUGUUGAAUUUUAAUUGCACGCAGCAGGUUCAGCUGAG------AGCAACAGAAACAGACA- -------------(((-((((.(((.(((((((.(((((((((..((..(...)..))..))))))))))))))))))).((((......)------)))....)))))))...- ( -26.30) >DroEre_CAF1 13649 90 + 1 -------------UUU-UUUUGCAG----UUGUGUGUUGAAGUGAAAUGGAAUUUGUUGAAUUUUAAUUGCACGCAGC---AC--GCUGCCGGCGAAAACAACAGAAAAA-UUA- -------------..(-((((((.(----(.((((((((..(((((.((((((((...)))))))).)).))).))))---))--)).))..)))))))...........-...- ( -23.40) >DroYak_CAF1 13537 90 + 1 -------------UUU-UUUUGCAG----UUGUGUGUUGAAGUGAAAUGGAAUUUGUUGAAUUUUAAUUGCACGCAGC---AC--GCUGCCGGCGAAAACAACAGAAAAA-CUA- -------------..(-((((((.(----(.((((((((..(((((.((((((((...)))))))).)).))).))))---))--)).))..)))))))...........-...- ( -23.40) >DroAna_CAF1 8612 105 + 1 UUCGGCGGUGAUCUCUUUUUUGUAU----CUGUGUGUUCAAGUGAAAUGGAAUUUGGUGAAUUUUAAUUGCACGCAGC---AA--GCUGCCGGCAACAGCAACAGCAAGA-GCAA ..(((((((................----((((((((.....((((((............))))))...)))))))).---..--)))))))((....))....((....-)).. ( -24.81) >consensus _____________UUU_UUUUGCAG____UUGUGUGUUGAAGUGAAAUGGAAUUUGUUGAAUUUUAAUUGCACGCAGC___AC__GCUGCCGGCGAAAACAACAGAAAAA_ACA_ .................((((((........((((((((((((..(((.......)))..))))))).)))))(((((.......)))))..))))))................. (-12.28 = -13.95 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:02 2006