Locus 8634

Sequence ID X_DroMel_CAF1
Location 21,716,240 – 21,716,339
Length 99
Max. P 0.981341
window14192

overview

Window 2

Location 21,716,240 – 21,716,339
Length 99
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 77.33
Mean single sequence MFE -25.82
Consensus MFE -11.77
Energy contribution -12.53
Covariance contribution 0.75
Combinations/Pair 1.16
Mean z-score -3.37
Structure conservation index 0.46
SVM decision value 1.88
SVM RNA-class probability 0.981341
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21716240 99 - 22224390
AGCAGAAAAGAUAUCCAUGAAUACGAUAUCGCAUAUCGGCUGAUUAAGAAGGAGCUUAUAGUAUAUGUACAUAUU---GUACAUUUUUUGUCUGUCCAAAUA
(((.((...((((((.........)))))).....)).))).........(((.(..((((...((((((.....---))))))...))))..))))..... ( -18.80)
>DroSec_CAF1 11613 96 - 1
AGCAGGAUAGAUAUCCACGAAUGCA--UUCGCAUAUCGGCUGAUUAA---GGAGCCUAUA-UGUAAGUACAUACUUACAUAUAUGUAUUGUCUGUCCAAAUA
....(((((((((...((((((((.--...)))).))((((......---..))))((((-(((((((....))))))))))).))..)))))))))..... ( -32.90)
>DroSim_CAF1 10808 96 - 1
AGCAGGAUAGAUAUCCACGAAUGCA--UUCGCAUAUCGGCUGAUUAA---GGAGCCUAUA-UGUAAGUAAAUACUUACAUAUAUGUAUUGUCUGUCCAAAUA
....(((((((((...((((((((.--...)))).))((((......---..))))((((-(((((((....))))))))))).))..)))))))))..... ( -32.90)
>DroEre_CAF1 9669 82 - 1
AGCAGAAUAGAUAUCCAUGAAUGCA--UGCGCAAAUUGGCGGAUUAA---GGUGACUACA-UAUA--------------UGCAUAUAUUGUCUGUCCAAAUA
.(((((...(((((......(((((--(((((......))).....(---(....))...-..))--------------)))))))))).)))))....... ( -18.70)
>consensus
AGCAGAAUAGAUAUCCACGAAUGCA__UUCGCAUAUCGGCUGAUUAA___GGAGCCUAUA_UAUAAGUACAUACU___AUACAUGUAUUGUCUGUCCAAAUA
....(((((((((.....((((((......)))).))((((...........))))................................)))))))))..... (-11.77 = -12.53 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:01 2006