Locus 8595

Sequence ID X_DroMel_CAF1
Location 21,321,950 – 21,322,058
Length 108
Max. P 0.588227
window14132

overview

Window 2

Location 21,321,950 – 21,322,058
Length 108
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 86.11
Mean single sequence MFE -40.13
Consensus MFE -27.76
Energy contribution -30.10
Covariance contribution 2.34
Combinations/Pair 1.06
Mean z-score -2.13
Structure conservation index 0.69
SVM decision value 0.11
SVM RNA-class probability 0.588227
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21321950 108 - 22224390
UGGAAAGUGGCAGUGUCAA------------UGGCAGCGGCAGCAAAUCGGGAGGCAAAAAGGACAGGACAGCCGGAAAAACCGAGAAACAGGGCCGGCUGCUGCCACAACUUUUUCUAU
(((((((((((((((((..------------..((.((....))....(....)))......))))...(((((((.....((........)).)))))))))))))).....)))))). ( -37.70)
>DroEre_CAF1 60653 120 - 1
UGGAAAGUGGCAGUGGCAGUGGCAGUGGCAGUGGCAGUGCCAGCAAAUCUGGACGCAAACAGGACGGGACAGCCGGAAAAAACUAGAAACAGGGCCGGCUGCUGCCAGAACUUUUUCUAU
((((((((((((.((.((.((.(...).)).)).)).))))).....(((((.(((......).))((.(((((((......((......))..))))))))).)))))...))))))). ( -41.50)
>DroYak_CAF1 64347 120 - 1
UGGAAAGUGGCAGUGGCAGUCGCAGUGGCAGUGGCAGUGGCAGCAAAUCUGGACGCAAACAGGACAGGACAGUCGGAAAAACCCAGAAACAGGGCCGGCUGCUGCCAGAACUUUUUCUAU
(((((((((.((.((.((.......)).)).)).)).(((((((...((((..(.......)..))))..((((((.....(((.......)))))))))))))))).....))))))). ( -41.20)
>consensus
UGGAAAGUGGCAGUGGCAGU_GCAGUGGCAGUGGCAGUGGCAGCAAAUCUGGACGCAAACAGGACAGGACAGCCGGAAAAACCCAGAAACAGGGCCGGCUGCUGCCAGAACUUUUUCUAU
(((((((((.((.((.((.......)).)).)).))..((((((...((((..(.......)..))))..((((((.....((........)).))))))))))))......))))))). (-27.76 = -30.10 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:03 2006