Locus 8579

Sequence ID X_DroMel_CAF1
Location 21,290,752 – 21,290,852
Length 100
Max. P 0.987009
window14109 window14110

overview

Window 9

Location 21,290,752 – 21,290,852
Length 100
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 85.83
Mean single sequence MFE -29.98
Consensus MFE -26.27
Energy contribution -26.52
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.88
SVM decision value 1.15
SVM RNA-class probability 0.922359
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21290752 100 + 22224390
ACACAC-CCACACAUGGCAUGGUGUUAGG-GGUGUUGGGGCCUCACCAACACACACAUAGCCACGCAUGAAUGCCUGCAAAGUAUGCAAAGUUUAUUCAUGA
......-.....((((((.((((......-.(((((((.......))))))).......)))).))((((((...((((.....))))..)))))).)))). ( -28.84)
>DroSec_CAF1 31112 102 + 1
ACACACCCCACACAUGGCAUGGUGUUAGGGGGUGUUGGGGCCUCACCAACACACACAUAGCCACGCAUGAAUGCCUGCAAAGUAUGCAAAGUUUAUUCAUGA
.....((((((((........))))..))))(((((((.......))))))).............((((((((..((((.....)))).....)))))))). ( -30.90)
>DroEre_CAF1 30324 84 + 1
---------A----GGG---GGUGUUGG--GGUGUUGGGGCUGCACCAACACACACACAGCCGCGCAUGAAUGCCUGCAAAGUAUGCAAAGUUUAUUCAUGA
---------.----(.(---(.(((((.--.(((((((.......))))))).)).))).)).).((((((((..((((.....)))).....)))))))). ( -29.50)
>DroYak_CAF1 32743 94 + 1
-------ACAGACAUGGCAUGGUGUUGGG-GGUGUUGGGGCUGCACCAACACACACAUAGCCACGCAUGAAUGCCUGCAAAGUAUGCAAAGUUUAUUCAUGA
-------.......(((((((((((.(..-(((((.......)))))..))))).))).))))..((((((((..((((.....)))).....)))))))). ( -30.70)
>consensus
_______CCACACAUGGCAUGGUGUUAGG_GGUGUUGGGGCCGCACCAACACACACAUAGCCACGCAUGAAUGCCUGCAAAGUAUGCAAAGUUUAUUCAUGA
...............(((...((((......(((((((.......)))))))))))...)))...((((((((..((((.....)))).....)))))))). (-26.27 = -26.52 +   0.25)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 0

Location 21,290,752 – 21,290,852
Length 100
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 85.83
Mean single sequence MFE -32.40
Consensus MFE -26.50
Energy contribution -27.50
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.71
Structure conservation index 0.82
SVM decision value 2.06
SVM RNA-class probability 0.987009
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21290752 100 - 22224390
UCAUGAAUAAACUUUGCAUACUUUGCAGGCAUUCAUGCGUGGCUAUGUGUGUGUUGGUGAGGCCCCAACACC-CCUAACACCAUGCCAUGUGUGG-GUGUGU
.............(((((.....)))))(((((((((((((((...(((((((((((.(....)))))))).-....))))...)))))))))))-)))).. ( -39.00)
>DroSec_CAF1 31112 102 - 1
UCAUGAAUAAACUUUGCAUACUUUGCAGGCAUUCAUGCGUGGCUAUGUGUGUGUUGGUGAGGCCCCAACACCCCCUAACACCAUGCCAUGUGUGGGGUGUGU
.............(((((.....)))))(((((((((((((((...(((((((((((.(....))))))))......))))...))))))))).)))))).. ( -34.80)
>DroEre_CAF1 30324 84 - 1
UCAUGAAUAAACUUUGCAUACUUUGCAGGCAUUCAUGCGCGGCUGUGUGUGUGUUGGUGCAGCCCCAACACC--CCAACACC---CCC----U---------
.(((((((....((((((.....)))))).)))))))...((..((((..(((((((.......))))))).--...)))).---.))----.--------- ( -25.10)
>DroYak_CAF1 32743 94 - 1
UCAUGAAUAAACUUUGCAUACUUUGCAGGCAUUCAUGCGUGGCUAUGUGUGUGUUGGUGCAGCCCCAACACC-CCCAACACCAUGCCAUGUCUGU-------
.(((((((....((((((.....)))))).)))))))((((((...(((((((((((.......))))))).-....))))...)))))).....------- ( -30.70)
>consensus
UCAUGAAUAAACUUUGCAUACUUUGCAGGCAUUCAUGCGUGGCUAUGUGUGUGUUGGUGAAGCCCCAACACC_CCCAACACCAUGCCAUGUGUGG_______
.(((((((....((((((.....)))))).)))))))((((((...(((((((((((.......)))))))......))))...))))))............ (-26.50 = -27.50 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:42 2006