| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,426,496 – 2,426,611 |
| Length | 115 |
| Max. P | 0.944485 |
| Location | 2,426,496 – 2,426,611 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 95.39 |
| Mean single sequence MFE | -34.20 |
| Consensus MFE | -31.67 |
| Energy contribution | -31.90 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.944485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2426496 115 - 22224390 AAUAGCUUGUCAAUUCCACUUGAUGGGUGGAUACUCAUAGUGGAUAGUGACAGGCAAUCAGGAUUUAUGUGAACUUAAAUUCGUUAGU-GGACGGAGCUUUAAAUGUGCAAUAAGU ....((((((((..((((((..((((((....))))))))))))...)))))))).....(((((((.(....).))))))).(((.(-(.(((..........))).)).))).. ( -34.50) >DroSec_CAF1 69951 115 - 1 AAUAGCUUGUCAAUUCCACUUGAUG-GUGGCUACUCGCAGUGGAUAGUGACAGGCAAUCAGGAUUUAUGUGGAUUUAAAUUCGUUAGUCGGACGGAGCUUUAAAUGUGCAAUAAGU ....((((((((..(((((((((.(-.......)))).))))))...)))))))).......(((((((((.(((((((((((((.....))))))..))))))).))).)))))) ( -35.10) >DroSim_CAF1 36210 115 - 1 AAUAGCUUGUCAAUUCCACUUGAUG-GUGGCUACUCGCAGUGGAUAGUGACAGGCAAUCAGGAUUUAUGUGGAUUUAAAUUCGUUAGUCGCACGGAGCUUUAAAUGUGCAAUAAGU ....((((((((..(((((((((.(-.......)))).))))))...)))))))).....(((((((........))))))).......(((((..........)))))....... ( -33.00) >consensus AAUAGCUUGUCAAUUCCACUUGAUG_GUGGCUACUCGCAGUGGAUAGUGACAGGCAAUCAGGAUUUAUGUGGAUUUAAAUUCGUUAGUCGGACGGAGCUUUAAAUGUGCAAUAAGU ....((((((((..((((((......((((....))))))))))...)))))))).......(((((((((.(((((((((((((.....))))))..))))))).))).)))))) (-31.67 = -31.90 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:21 2006