Locus 854

Sequence ID X_DroMel_CAF1
Location 2,426,079 – 2,426,170
Length 91
Max. P 0.992986
window1375

overview

Window 5

Location 2,426,079 – 2,426,170
Length 91
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 72.67
Mean single sequence MFE -23.14
Consensus MFE -9.39
Energy contribution -10.20
Covariance contribution 0.81
Combinations/Pair 1.30
Mean z-score -2.72
Structure conservation index 0.41
SVM decision value 2.37
SVM RNA-class probability 0.992986
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2426079 91 + 22224390
UUCCGUCCCCCACCCUC---------ACCA----CUUUGCCCACUAGCCUUUUGUUAGCGAGCAUUGGCCCAUUCAAUGCAUUUCGU-CUCUCUGAAUGGCGGCU
..(((............---------.(((----...(((.(.(((((.....))))).).))).))).(((((((...........-.....)))))))))).. ( -18.69)
>DroPse_CAF1 103083 99 + 1
UCCUACC-CCCUC-CUGACACCGAACACCAAGCCCCAUUC---CCACCCUCUUGUCUAGGGGCAUUGGCCCGCUCUAUGCAUUUCGCCCUUUAUGAAUAGA-GCU
.......-.....-.............(((((((((....---...............))))).))))...(((((((.(((..........))).)))))-)). ( -23.41)
>DroSim_CAF1 35817 90 + 1
UUCCGUCACCCAC-UUC---------ACCA----CUUGGCCCACUAGCCUUUUGUUAGCGAGCAUUGGCCCAUUCAAUGCACUUCGU-CUCGCUGAAUGGCGGCU
..((((((.....-...---------....----...(((......))).....((((((((((((((.....))))))).......-.))))))).)))))).. ( -25.10)
>DroEre_CAF1 71951 89 + 1
UUCCGCC-CCCAC-UUC---------ACCA----CCUUUUCCACUAGCCUUUUGUUAGCGAGCAUUGGCCCAUUCAAUGCAUUUCGU-CUCUCUGAAUGGAGGCU
....(((-.(((.-(((---------(...----.......(.(((((.....))))).).(((((((.....))))))).......-.....))))))).))). ( -22.60)
>DroYak_CAF1 72913 89 + 1
UUCCGCC-UCCAC-UUC---------ACCA----CCUAUUUCACUAGCCUUUUGUUAGCGAGCAUUGGCCCAUUCAAUGCAUUUCGU-CUCUCUGAAUGGGGGCU
....(((-((((.-(((---------(...----......((.(((((.....))))).))(((((((.....))))))).......-.....))))))))))). ( -28.00)
>DroPer_CAF1 103878 99 + 1
UCCUACC-CCCUC-CUGACACCGAACACCAAGCCCCAUUC---CCACCCUCUUGUCUAGGGGCAUUGGCCCGUUCUAUGCAUUUCGCCCUUUAUGAAUAGA-GCU
.......-.....-.............(((((((((....---...............))))).))))...(((((((.(((..........))).)))))-)). ( -21.01)
>consensus
UUCCGCC_CCCAC_CUC_________ACCA____CCUUUCCCACUAGCCUUUUGUUAGCGAGCAUUGGCCCAUUCAAUGCAUUUCGU_CUCUCUGAAUGGAGGCU
.............................................(((((((..((((.(((((((((.....))))))).........)).))))..))))))) ( -9.39 = -10.20 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:20 2006