Locus 8538

Sequence ID X_DroMel_CAF1
Location 21,150,790 – 21,150,910
Length 120
Max. P 0.697317
window14051

overview

Window 1

Location 21,150,790 – 21,150,910
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.44
Mean single sequence MFE -42.88
Consensus MFE -26.55
Energy contribution -28.08
Covariance contribution 1.53
Combinations/Pair 1.21
Mean z-score -2.01
Structure conservation index 0.62
SVM decision value 0.34
SVM RNA-class probability 0.697317
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21150790 120 + 22224390
CAUUCCCCAGCUCCAUGCGGCAGAUGUCGCGGGUGCAGUGGCUCACACUGGAUCGCACGCAGCUGGCGGAGAUUCCCGAGGAGCUAGGCCACCUACAGAAGCUGGAGCACCUGUCGCUGA
......((((((.(..(((((....)))))((((((..((((((.....(((((...(((.....)))..))))).....)))))).).)))))...).))))))(((.......))).. ( -45.60)
>DroVir_CAF1 91343 120 + 1
CAUUCCCCAGCUCCAUGCGGCAAAUGUCGCGCGUCCAGUGGCUAACACUAGACCACACACAGCUGCAGCAAAUACCCGAGGAGCUGGGCCAUCUUCAGAAGCUGGAGCACCUCUCCCUAA
.....(((((((((..(((((....)))))(.(((.((((.....)))).)))).......((....))..........)))))))))....((((((...))))))............. ( -40.80)
>DroGri_CAF1 98229 120 + 1
CAUUCCCUAGUUCGAUGCGGCAAAUGUCUCGGGUCCAGUGGCUAACACUGGACCACACACAGCUCCAUCAAAUACCCGAGGAGCUGGGCCACCUGCAGAAAUUGGAGCACCUAUCCUUGA
......((((((...(((((.....(((...(((((((((.....))))))))).....(((((((.((........))))))))))))...)))))..))))))............... ( -43.10)
>DroWil_CAF1 16001 120 + 1
CAUUCCCUAGCUCCAUGCGCCAAAUGCUACGGGUGCAAUGGCUCAAUUUGGAUCGCACCCAAUUGCAAGAAGUGCCCGAGGAGCUGGGCCAAUUGCAGAAACUGGAGCAUUUGUCCCUCA
.....(((((((((..((((....(((...((((((...((..(.....)..))))))))....)))....))))....))))))))).(((.(((..........))).)))....... ( -38.10)
>DroMoj_CAF1 42329 120 + 1
CAUUCCCCAGCUCCAUGCGGCAAAUGUCGCGCGUCCAGUGGCUGACACUGGACCACACACACCUACAGCAAGUACCCGAGGAGCUGGGCCACUUACAGAAACUCGAGCACCUCUCACUCA
.....(((((((((..(((((....)))))(.((((((((.....))))))))).........................)))))))))................(((.....)))..... ( -43.80)
>DroAna_CAF1 16520 120 + 1
CAUUCCCCAGCAGCAUGCGGCAAAUGUCGCGGGUGCAGUGGCUCAAUCUGGAUCGCACCCAGCUGGCGGAGAUACCCGAAGAGCUGGGCCACCUGCAGAAGCUGGAGCAUCUCUCCCUAA
......(((((.......(((....)))(((((((..((((..(.....)..)))).(((((((..(((......)))...))))))).)))))))....)))))............... ( -45.90)
>consensus
CAUUCCCCAGCUCCAUGCGGCAAAUGUCGCGGGUCCAGUGGCUCACACUGGACCACACACAGCUGCAGCAAAUACCCGAGGAGCUGGGCCACCUGCAGAAACUGGAGCACCUCUCCCUAA
.....(((((((((.((((((....))))))(((.(((((.....))))).))).........................)))))))))(((.((.....)).)))............... (-26.55 = -28.08 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:48 2006