Locus 8523

Sequence ID X_DroMel_CAF1
Location 21,091,780 – 21,091,875
Length 95
Max. P 0.930570
window14028 window14029

overview

Window 8

Location 21,091,780 – 21,091,875
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 97.89
Mean single sequence MFE -35.77
Consensus MFE -34.79
Energy contribution -34.13
Covariance contribution -0.66
Combinations/Pair 1.10
Mean z-score -2.21
Structure conservation index 0.97
SVM decision value 1.21
SVM RNA-class probability 0.930570
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21091780 95 + 22224390
ACCGUCGGGAGCCCAACUGACACCUUCAGUGCUUCGUUUUGCACUGAGCGCCAACGCAGCGCCAGUGUAGCGCCAAAAACCGGUUCGGCUCCACG
.....((((((((.(((((......(((((((........)))))))((((..((((.......)))).)))).......))))).)))))).)) ( -39.00)
>DroSec_CAF1 21929 95 + 1
ACCGUCGGGAGUCCAACUGACACCUUCAGUGCUUCGUUUUGCACUGAGCGCCAACGCAGCGCCAGUGUAGCACCAAAAACCGGUUCGGUUCCACG
((((((((((((...(((((.....))))))))).((.((((((((.((((.......)))))))))))).))......))))..))))...... ( -31.70)
>DroSim_CAF1 35302 95 + 1
ACCGUCGGGAGCCCAACUGACACCUUCAGUGCUUCGUUUUGCACUGAGCGCCAACGCAGCGCCAGUGUAGCGCCAAAAACCGGUUCGGUUCCACG
.....((((((((.(((((......(((((((........)))))))((((..((((.......)))).)))).......))))).)))))).)) ( -36.60)
>consensus
ACCGUCGGGAGCCCAACUGACACCUUCAGUGCUUCGUUUUGCACUGAGCGCCAACGCAGCGCCAGUGUAGCGCCAAAAACCGGUUCGGUUCCACG
.....((((((((.(((((.(((.....)))....((.((((((((.((((.......)))))))))))).)).......))))).)))))).)) (-34.79 = -34.13 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 21,091,780 – 21,091,875
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 97.89
Mean single sequence MFE -41.00
Consensus MFE -39.59
Energy contribution -39.70
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.18
Structure conservation index 0.97
SVM decision value 1.11
SVM RNA-class probability 0.916869
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21091780 95 - 22224390
CGUGGAGCCGAACCGGUUUUUGGCGCUACACUGGCGCUGCGUUGGCGCUCAGUGCAAAACGAAGCACUGAAGGUGUCAGUUGGGCUCCCGACGGU
((.((((((.(((........((((((.....))))))....(((((((((((((........)))))))..))))))))).))))))))..... ( -44.10)
>DroSec_CAF1 21929 95 - 1
CGUGGAACCGAACCGGUUUUUGGUGCUACACUGGCGCUGCGUUGGCGCUCAGUGCAAAACGAAGCACUGAAGGUGUCAGUUGGACUCCCGACGGU
.((((.((((((......)))))).))))..((((((((((....)))(((((((........))))))).)))))))(((((....)))))... ( -38.70)
>DroSim_CAF1 35302 95 - 1
CGUGGAACCGAACCGGUUUUUGGCGCUACACUGGCGCUGCGUUGGCGCUCAGUGCAAAACGAAGCACUGAAGGUGUCAGUUGGGCUCCCGACGGU
(((.((((((...)))))...((.(((..((((((((((((....)))(((((((........))))))).)))))))))..))).))).))).. ( -40.20)
>consensus
CGUGGAACCGAACCGGUUUUUGGCGCUACACUGGCGCUGCGUUGGCGCUCAGUGCAAAACGAAGCACUGAAGGUGUCAGUUGGGCUCCCGACGGU
.((((.((((((......)))))).))))..((((((((((....)))(((((((........))))))).)))))))(((((....)))))... (-39.59 = -39.70 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:28 2006