| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,083,676 – 21,083,780 |
| Length | 104 |
| Max. P | 0.864306 |
| Location | 21,083,676 – 21,083,780 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 96.83 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -25.51 |
| Energy contribution | -25.29 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.864306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21083676 104 - 22224390 GCAAUUGAAAAGGCCAUUGUGAUUUAUGAAAAUUAUGAGCCCAACUUUACCCACCUCAAAAAAUAUUUGGAGGGU-UUGGGCGAAUUUCAUUUUCGCUCGCUUCU ..........((((....((((...((((((.((....((((((....((((.((.............)).))))-)))))).))))))))..))))..)))).. ( -26.82) >DroSec_CAF1 13846 105 - 1 GCAAUUGAAAAGCCCAUUGUGAUUUAUGAAAAUUAUGAGCCCAACUUUACCCACCUCAAAAAAUAUUUGGAGGGUUUUGGGCGAAUUUCAUGUUCGCUCGCUUCU .........((((.....((((..(((((((.((....((((((....((((.((.............)).)))).)))))).))))))))).))))..)))).. ( -27.62) >DroSim_CAF1 14083 105 - 1 GCAAUUGAAAAGGCCAUUGUGAUUUAUGAAAAUUAUGAGCCCAACUUUGCCCACCUCAAAAAAUAUUUGGAGGGUUUUGGGCGAAUUUCAUUUUCGCCCGCUUCU ((.........(((..(..((((((....))))))..)))).......((((.((.............)).))))...(((((((.......))))))))).... ( -28.22) >consensus GCAAUUGAAAAGGCCAUUGUGAUUUAUGAAAAUUAUGAGCCCAACUUUACCCACCUCAAAAAAUAUUUGGAGGGUUUUGGGCGAAUUUCAUUUUCGCUCGCUUCU ((..((....))......((((...((((((.((....((((((....((((.((.............)).)))).)))))).))))))))..))))..)).... (-25.51 = -25.29 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:22 2006