Locus 8512

Sequence ID X_DroMel_CAF1
Location 21,078,485 – 21,078,602
Length 117
Max. P 0.974495
window14016

overview

Window 6

Location 21,078,485 – 21,078,602
Length 117
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 98.86
Mean single sequence MFE -40.17
Consensus MFE -38.35
Energy contribution -38.13
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.93
Structure conservation index 0.95
SVM decision value 1.73
SVM RNA-class probability 0.974495
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21078485 117 + 22224390
CACAGGUGGAAAAUGAAAUGAAAUCUGCCUUAACCGUGUCUAUCUGGAUAUGGUGUGCAUCUGGAUAGCAAGUUCAGGCGGAAGUUCAUAUGCGAUAUCUUUUACGGCCAUCUGGCA
..(((((((........(((((.(((((((.(((..((.(((((..(((.........)))..))))))).))).)))))))..)))))...((.((.....)))).)))))))... ( -37.90)
>DroSec_CAF1 8529 117 + 1
CACAGGUGGAAAACGAAAUGAAAUCUGCCUUAACCGUGUCUAUCUGGAUAUGGUGUGCAUCUGGAUAGCAAGUUCAGGCGGAAGUUCAUAUGCGAUAUCUUUUACGGCCAUCUGGCA
..(((((((....((..(((((.(((((((.(((..((.(((((..(((.........)))..))))))).))).)))))))..)))))....(....).....)).)))))))... ( -38.40)
>DroSim_CAF1 8671 117 + 1
CACAGGUGGAAAACGAAAUGAAAUCUGCCUUAACCGUGUCUAUCUGGAUGUGGUGUGCAUCUGGAUAGCAAGUUCAGGCGGAAGUUCAUAUGCGAUAUCUUUUACGGCCAUCUGGCA
..(((((((....((..(((((.(((((((.(((..((.(((((..(((((.....)))))..))))))).))).)))))))..)))))....(....).....)).)))))))... ( -44.20)
>consensus
CACAGGUGGAAAACGAAAUGAAAUCUGCCUUAACCGUGUCUAUCUGGAUAUGGUGUGCAUCUGGAUAGCAAGUUCAGGCGGAAGUUCAUAUGCGAUAUCUUUUACGGCCAUCUGGCA
..(((((((....((..(((((.(((((((.(((..((.(((((..(((.........)))..))))))).))).)))))))..)))))....(....).....)).)))))))... (-38.35 = -38.13 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:16 2006