| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,073,165 – 21,073,276 |
| Length | 111 |
| Max. P | 0.716510 |
| Location | 21,073,165 – 21,073,276 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.99 |
| Mean single sequence MFE | -25.52 |
| Consensus MFE | -16.84 |
| Energy contribution | -17.07 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21073165 111 - 22224390 CAAAAGAGCACAGAA-------AACGGAAAACUGGAAAAAAACAAACCGAAUAAAAUUUGUAUAAACUGAUCCGAACUCAGAUUUGUGCAAGUCCGAAAUGGAAAACUCGUGUU--CGGA .....((((((....-------..((((....(((...........))).......((((((((((((((.......)))).)))))))))))))).....((....)))))))--)... ( -24.40) >DroEre_CAF1 43554 114 - 1 CAAAAGAGCACGGAAAACGGAAAACGGAAAACUGGAA-AAAGCAAGCCGACUAAAAUUUGUAUAAACCGAG-U--GUUCGGAUUUGGGCAAGUCCGAAAUGGAAAACUCGUGUG--CGGA .......(((((......((....(((....((....-..))....)))((........)).....))(((-(--.(((((((((....))))))))).......)))).))))--)... ( -26.70) >DroYak_CAF1 49363 118 - 1 CAAAAGAGCACGGAAUAUGAGGAACGGAAAACUGGAA-AAAACAAACCGAAUAAAAUUUGUAUAAACUGAG-UGAGUUCGGAUUUGGGCAAGUCCGAAAUGGAAAACUCGUGUGUUCGCA .....((((((((...........(((....)))...-........))....................(((-(...(((((((((....))))))))).......))))..))))))... ( -25.45) >consensus CAAAAGAGCACGGAA_A_G___AACGGAAAACUGGAA_AAAACAAACCGAAUAAAAUUUGUAUAAACUGAG_UGAGUUCGGAUUUGGGCAAGUCCGAAAUGGAAAACUCGUGUG__CGGA .......((((((...........(((....)))............(((......((((((.(((((((((.....))))).)))).))))))......))).....))))))....... (-16.84 = -17.07 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:10 2006