Locus 85

Sequence ID X_DroMel_CAF1
Location 337,220 – 337,340
Length 120
Max. P 0.917681
window114

overview

Window 4

Location 337,220 – 337,340
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 81.39
Mean single sequence MFE -43.43
Consensus MFE -31.94
Energy contribution -33.30
Covariance contribution 1.36
Combinations/Pair 1.03
Mean z-score -2.18
Structure conservation index 0.74
SVM decision value 1.12
SVM RNA-class probability 0.917681
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 337220 120 - 22224390
CCCCGAUCAGCCUAGCUCAGUGUCCUGUGGCAGGAUCUAAUCCAGGCCAUCAUUAGCUAUCGCGCGGAAAGAAAGCUGACACAGGACAUAAGUGAAACGGAGGUGGAUGGUUUGGCGGAC
(((((((((..(((.(((.((((((((((((.((((...))))..)))....((((((.((.........)).)))))).)))))))))..(.....).))).))).))).)))).)).. ( -41.90)
>DroSec_CAF1 3502 120 - 1
GACCGAGCAGCCCAGCUCAGUGCCCUUUGCCAGGAUCUCAUCCAGGCCAUCGUUGGCUAUCGGGCGGAAAGAAAGCAGACACAGGACAUAAGUGAAACGGAGCUGGAUGGUUUGGCGGAC
(.((((((...(((((((.((((((.......((((...)))).(((((....)))))...))))..............(((.........)))..)).)))))))...))))))).... ( -41.60)
>DroSim_CAF1 2649 102 - 1
GACCGAGCAGCCCAGCUCAGUGUCCUGUGCCC------------------UGUUGGCUAUCGGGCGGAAAGAAAGCAGACACAGGACAUAAGUGAAACGGAGCUGGAUGGUUUGGUGGAC
.(((((((...(((((((.((((((((((..(------------------((((..((.((.....)).))..))))).))))))))))..(.....).)))))))...))))))).... ( -46.80)
>consensus
GACCGAGCAGCCCAGCUCAGUGUCCUGUGCCAGGAUCU_AUCCAGGCCAUCGUUGGCUAUCGGGCGGAAAGAAAGCAGACACAGGACAUAAGUGAAACGGAGCUGGAUGGUUUGGCGGAC
..((((((...(((((((.((((((((((...(((.....)))............(((.((.........)).)))...))))))))))..(.....).)))))))...))))))..... (-31.94 = -33.30 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:43 2006