Locus 8492

Sequence ID X_DroMel_CAF1
Location 21,056,635 – 21,056,755
Length 120
Max. P 0.681834
window13972 window13973

overview

Window 2

Location 21,056,635 – 21,056,755
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.20
Mean single sequence MFE -31.57
Consensus MFE -30.85
Energy contribution -30.41
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.98
SVM decision value 0.26
SVM RNA-class probability 0.655718
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21056635 120 + 22224390
AAGUGGGAACCGCAAGCCGAAAUGCAAUUAUUUUUGCCGUCCGUCCAAAAACCCGGUAUUUGCAUAUUGUCAACAUAAUUAAAGAGGCUUUUGACUUGUGGUUACACGCCCACUCGAACG
.(((((((((((((((.((((((((((.......(((((...((......)).))))).))))))...(((..............))).)))).))))))))).....))))))...... ( -31.04)
>DroEre_CAF1 27586 117 + 1
AAGUGGGAACCGCAAGCCGAAAUGCAAUUAUUUUUGCCGUCCGUCCAA-AACCCGGUAUUUGCAUAUUGUCAACAUAAUUAAAGAGGCUUUUGACUUGUGGUUACACGCCCACUCGAA--
.(((((((((((((((.((((((((((.......(((((.........-....))))).))))))...(((..............))).)))).))))))))).....))))))....-- ( -30.96)
>DroYak_CAF1 30490 117 + 1
AAGUGGGAACCGCAAGCCGAAAUGCAAUUAUUUUUGCUGUCCGUCCAA-AGCCCGGUAUUUGCAUAUUGUCAACAUAAUUAAAGAGGCUUUUGACUUGUGGUUACACGCCCACUCGAA--
.((((((((((((((...((...((((......))))..)).(((.((-((((((((((....))))))((............)))))))).))))))))))).....))))))....-- ( -32.70)
>consensus
AAGUGGGAACCGCAAGCCGAAAUGCAAUUAUUUUUGCCGUCCGUCCAA_AACCCGGUAUUUGCAUAUUGUCAACAUAAUUAAAGAGGCUUUUGACUUGUGGUUACACGCCCACUCGAA__
.(((((((((((((((.((((((((((.......(((((...((......)).))))).))))))...(((..............))).)))).))))))))).....))))))...... (-30.85 = -30.41 +  -0.44)

alignment

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secondary structure

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dotplot

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Window 3

Location 21,056,635 – 21,056,755
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.20
Mean single sequence MFE -33.93
Consensus MFE -32.38
Energy contribution -32.16
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.70
Structure conservation index 0.95
SVM decision value 0.31
SVM RNA-class probability 0.681834
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21056635 120 - 22224390
CGUUCGAGUGGGCGUGUAACCACAAGUCAAAAGCCUCUUUAAUUAUGUUGACAAUAUGCAAAUACCGGGUUUUUGGACGGACGGCAAAAAUAAUUGCAUUUCGGCUUGCGGUUCCCACUU
.....(((((((.....((((.((((((((((((((.......(((((.....)))))........)))))))))..((((..((((......))))..))))))))).))))))))))) ( -35.06)
>DroEre_CAF1 27586 117 - 1
--UUCGAGUGGGCGUGUAACCACAAGUCAAAAGCCUCUUUAAUUAUGUUGACAAUAUGCAAAUACCGGGUU-UUGGACGGACGGCAAAAAUAAUUGCAUUUCGGCUUGCGGUUCCCACUU
--...(((((((.....((((.((((((.(((((((.......(((((.....)))))........)))))-))....(((..((((......))))..))))))))).))))))))))) ( -32.46)
>DroYak_CAF1 30490 117 - 1
--UUCGAGUGGGCGUGUAACCACAAGUCAAAAGCCUCUUUAAUUAUGUUGACAAUAUGCAAAUACCGGGCU-UUGGACGGACAGCAAAAAUAAUUGCAUUUCGGCUUGCGGUUCCCACUU
--...(((((((.....((((.((((((.(((((((.......(((((.....)))))........)))))-))....(((..((((......))))..))))))))).))))))))))) ( -34.26)
>consensus
__UUCGAGUGGGCGUGUAACCACAAGUCAAAAGCCUCUUUAAUUAUGUUGACAAUAUGCAAAUACCGGGUU_UUGGACGGACGGCAAAAAUAAUUGCAUUUCGGCUUGCGGUUCCCACUU
.....(((((((.....((((.((((((((.(((((.......(((((.....)))))........))))).)))..((((..((((......))))..))))))))).))))))))))) (-32.38 = -32.16 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:39 2006