Locus 8491

Sequence ID X_DroMel_CAF1
Location 21,054,048 – 21,054,161
Length 113
Max. P 0.549912
window13971

overview

Window 1

Location 21,054,048 – 21,054,161
Length 113
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.63
Mean single sequence MFE -25.43
Consensus MFE -23.55
Energy contribution -23.33
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.93
SVM decision value 0.03
SVM RNA-class probability 0.549912
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21054048 113 - 22224390
AAUUAUGCUGCCCAGCUCUGCGCCGUCAACUCUCCUGACCCUGACAAAUUUAUGCGCAUCAUUAGGGCCAAAUAACUGUAUUGUGUGUUACGCAUACCAAUGCAUA-------UAGCAAA
.....((((((((.....(((((.((((..((....))...))))........)))))......))))........(((((((((((.....)))).)))))))..-------.)))).. ( -28.10)
>DroEre_CAF1 25078 120 - 1
AAUUAUGCUGCCCAGCUCUGCGCCGUCAACUCUCCUGACCCUGACAAAUUUAUGCGCAUCAUUAGGGCCAAAUAACUAUAUUGUGUGCUACGCAUACCCAUGCAUACUCGUUACACCAAA
...(((((.((((.....(((((.((((..((....))...))))........)))))......))))..............((((((...))))))....))))).............. ( -24.60)
>DroYak_CAF1 27829 113 - 1
AAUUAUGCUGCCCAGCUCUGCGCCGUCAACUCUCCUGACCCUGACAAAUUUAUGCGCAUCAUUAGGGCCAAAUAACUAUAUUGUGUGUUACGCAUACCCGUGCAUA-------UACCAAA
...(((((.((((.....(((((.((((..((....))...))))........)))))......))))..............(((((.....)))))....)))))-------....... ( -23.60)
>consensus
AAUUAUGCUGCCCAGCUCUGCGCCGUCAACUCUCCUGACCCUGACAAAUUUAUGCGCAUCAUUAGGGCCAAAUAACUAUAUUGUGUGUUACGCAUACCCAUGCAUA_______UACCAAA
...(((((.((((.....(((((.((((..((....))...))))........)))))......))))..............((((((...))))))....))))).............. (-23.55 = -23.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:38 2006