Locus 8458

Sequence ID X_DroMel_CAF1
Location 21,018,652 – 21,018,743
Length 91
Max. P 0.505906
window13894

overview

Window 4

Location 21,018,652 – 21,018,743
Length 91
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 93.48
Mean single sequence MFE -32.30
Consensus MFE -25.25
Energy contribution -26.70
Covariance contribution 1.45
Combinations/Pair 1.04
Mean z-score -2.24
Structure conservation index 0.78
SVM decision value -0.05
SVM RNA-class probability 0.505906
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21018652 91 - 22224390
CAGGCUUAGACAGACAGCCUCUGGUCAGAG-GGGCGUGGCAAGCCUGACCGCCACAUACAGGCCGAAAAUACACACGUACACACACAUACAC
..(((((.........((((((......))-))))(((((..........)))))....)))))............................ ( -24.80)
>DroSec_CAF1 5377 92 - 1
CAGGCUUAGCCAGCCAGCCUCUGGUCAGGGGGGGCGUGGCAAGCCUGACCGCCACACACAGGGCGAACAUACACACGGACACACACAUACAC
(((((((.(((((((..(((((....))))).))).)))))))))))..((((........))))........................... ( -37.20)
>DroSim_CAF1 5105 92 - 1
CAGGCUUAGCCAGCCAGCCUCUGGUCAGGGGGGGCGUGGCAAGCCUGACCGCCACACACAGGGCUAACAUACACACGGACACACACAUACAC
(((((((.(((((((..(((((....))))).))).)))))))))))...(((........)))............................ ( -34.90)
>consensus
CAGGCUUAGCCAGCCAGCCUCUGGUCAGGGGGGGCGUGGCAAGCCUGACCGCCACACACAGGGCGAACAUACACACGGACACACACAUACAC
(((((((.(((((((..(((((....))))).))).)))))))))))..((((........))))........................... (-25.25 = -26.70 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:30 2006