| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,016,686 – 21,016,785 |
| Length | 99 |
| Max. P | 0.913413 |
| Location | 21,016,686 – 21,016,785 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 67.12 |
| Mean single sequence MFE | -42.88 |
| Consensus MFE | -21.69 |
| Energy contribution | -21.67 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21016686 99 - 22224390 CCAGAUAGCCAAGCAACUGCAAGGCGGCGGAGCCGGAGGACCAGGUGGUGG------ACAGCCGGCUGGCGGCUACCAGCCAAGCGGUGGCUAUGGCGGAGGACC ((.....(((((((.(((((..(((...(((((((.....((((.((((..------...)))).))))))))).)).)))..))))).))).))))...))... ( -45.40) >DroVir_CAF1 39731 98 - 1 CCAAAUAGCCAAGCAGCUGCAGGGAGGCGGCGCCAAUGGCGGCGGUGGUGCCAACGGCGGAGGCAACAACGCUUAUCAACCAAGCGGAGGCUAUUCAU------- ...(((((((..((..((((..(..((((.((((.........)))).))))..).))))..)).....(((((.......)))))..)))))))...------- ( -38.10) >DroGri_CAF1 351 95 - 1 CCAAAUUGCCAAGCAGUUGCAGGGAGGCGGCGCCAACGGCGGCAA---UGCUCAGGGCGGUGGUAACAACGCCUAUCAGCCAAGCGGCGGCUAUUCAU------- ....((((((.....(((((......)))))(((...))))))))---)(((..(((((.((....)).)))))....(((....)))))).......------- ( -33.40) >DroSec_CAF1 3473 99 - 1 CCAGAUAGCCAAGCAACUGCAGGGCGGCGGAGCCGGAGGACCCGGUGGUGG------CCAGCCUGCUGGCGGCUACCAGCCGAGCGGUGGCUAUGGCGGAGGACC ((.....(((((((.(((((....((((...(((((.....)))))(((((------((.(((....)))))))))).)))).))))).))).))))...))... ( -52.40) >DroYak_CAF1 1476 99 - 1 CCAGAUAGCCAAGCAACUGCAGGGCGGCGGAGCCGGAGGAGCCGGUGGUGG------UCAGCCGGCUAGUGGCUACCAGCCAAGCGGUGGCUAUGGCGGAGGAUC ((.....(((((((.(((((..(((...(((((((....(((((((.....------...)))))))..))))).)).)))..))))).))).))))...))... ( -47.40) >DroMoj_CAF1 148266 92 - 1 CCAAAUAGCCAAGCAGCUGCAGGGCGGUGGGGCCAA------CGGUGGCGCUAACGCAGGCGGGGCCAACGGCUACCAGCCCAGCGGUGGCUACUCAA------- .....(((((.....(((((.((((((.....))..------.((((((((....)).(((...)))....)))))).)))).)))))))))).....------- ( -40.60) >consensus CCAAAUAGCCAAGCAACUGCAGGGCGGCGGAGCCAAAGGAGCCGGUGGUGC______CCAGCCGGCCAACGGCUACCAGCCAAGCGGUGGCUAUGCAG_______ ....((((((.....(((((..((((((...)))...((..(((.((((.(...........).)))).)))...)).)))..)))))))))))........... (-21.69 = -21.67 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:29 2006