Locus 8444

Sequence ID X_DroMel_CAF1
Location 20,999,416 – 20,999,526
Length 110
Max. P 0.563966
window13874

overview

Window 4

Location 20,999,416 – 20,999,526
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 92.19
Mean single sequence MFE -19.96
Consensus MFE -15.88
Energy contribution -16.12
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.80
SVM decision value 0.06
SVM RNA-class probability 0.563966
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20999416 110 + 22224390
AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACACAUACAUAUACGGCAAAAUCGAGCAGUUGAGCAUCCUGCAGGAGCCUCCAACUGCAGACCCUCUUA
...............(((((((.........)))))))............................(((((((((..(((....)))..)).)))))))........... ( -18.00)
>DroSec_CAF1 81284 106 + 1
AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACGC----AUAUACGGCAAAAGCGAGCAGUUGAGCAUCCUGCAGGAGCCUCCGACUGCAGACCCUCUUA
...............(((((((.........)))))))....(((----.............))).(((((((((..(((....)))..)).)))))))........... ( -19.82)
>DroSim_CAF1 96849 106 + 1
AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACAC----AUAUACGGCAAAAGCGAGCAGUUGAGCAUCCUGCAGGAGCCUCCGACUGCAGACCCUCUUA
..((...........(((((((.........))))))).......----.......((....))))(((((((((..(((....)))..)).)))))))........... ( -19.10)
>DroEre_CAF1 22898 104 + 1
AAUCGUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCACACAC----ACACACG-CAAAAGCGAGCAGUUGCGCAUCCUGCAGAUGCCUCCGACUGCAGAUCC-CCUA
.(((...........(((((((.........))))))).......----.....((-(....))).(((((((.(((((.....)))))...))))))).)))..-.... ( -22.10)
>DroYak_CAF1 27275 105 + 1
AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACAC----AUACACGGCAAAAGCGAGCAGUUGAGCAUCCUGCAGGAGCCUUCGACUGCAGACUC-CUUA
..((...........(((((((.........))))))).......----.......((....))))((((((((((.(((....)))))..))))))))......-.... ( -20.80)
>consensus
AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACAC____AUAUACGGCAAAAGCGAGCAGUUGAGCAUCCUGCAGGAGCCUCCGACUGCAGACCCUCUUA
..((...........(((((((.........)))))))............................(((((((.((.(((....)))))...))))))).))........ (-15.88 = -16.12 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:11 2006