| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,994,607 – 20,994,721 |
| Length | 114 |
| Max. P | 0.997829 |
| Location | 20,994,607 – 20,994,721 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.50 |
| Mean single sequence MFE | -28.53 |
| Consensus MFE | -17.34 |
| Energy contribution | -18.07 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.61 |
| SVM decision value | 2.94 |
| SVM RNA-class probability | 0.997829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20994607 114 - 22224390 CUCCAAACUCUCUUCUCUGCGCUGCCGUUACUACGCUCUUAUUUGUUGCUUAACUGGCAACAGGCAGGCCCUUCUUCCGCAGUUGACAUCUGCAU------UUGUGCGGAGUUUUAACAC ..............((((((((((((((....)).........(((((((.....)))))))))))............((((.......))))..------..))))))))......... ( -32.20) >DroSec_CAF1 76183 109 - 1 CUCCAAACUCUCUUUUUCGCACUGCG-----AACGCUCUUAUUUGUUGCGUAACGGGCAAUAAUCAGGCCCUUCUUCCGCAGUUGACAUAUGCAU------UAGUGCGGAGUUUUAACUU ((((............(((.((((((-----.((((...........))))...((((.........))))......))))))))).....(((.------...)))))))......... ( -28.90) >DroSim_CAF1 87012 99 - 1 CUCCAAACUCUCUUUUUCGCACUGCG-----UACGCUCUUAUUUGUUGCGUAA----------------CCUUCUUCCGCAGUUGACAUCUGCAUUAAUAUUAGUGCAGAGUUUUAACUC ....((((........(((.((((((-----(((((...........))))).----------------........)))))))))..(((((((((....)))))))))))))...... ( -24.50) >consensus CUCCAAACUCUCUUUUUCGCACUGCG_____UACGCUCUUAUUUGUUGCGUAAC_GGCAA_A__CAGGCCCUUCUUCCGCAGUUGACAUCUGCAU______UAGUGCGGAGUUUUAACUC ....(((((((.........(((((......(((((...........)))))...(((.........)))........)))))........((((........)))))))))))...... (-17.34 = -18.07 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:10 2006