Locus 8427

Sequence ID X_DroMel_CAF1
Location 20,919,538 – 20,919,643
Length 105
Max. P 0.638895
window13845

overview

Window 5

Location 20,919,538 – 20,919,643
Length 105
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.20
Mean single sequence MFE -29.75
Consensus MFE -22.33
Energy contribution -22.72
Covariance contribution 0.39
Combinations/Pair 1.09
Mean z-score -1.53
Structure conservation index 0.75
SVM decision value 0.22
SVM RNA-class probability 0.638895
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20919538 105 + 22224390
CCAUACGUACAUUUCCCUCCAGCGCUUGCCCUGUUUUAGUGUGGCAAACAUCCACGCCAAGUUAAAGGAGGGCCA---GCAUCCGUUGAGUGAUUCCUACAAGCGGUA
.......................(((.(((((.((((((..((((..........))))..)))))).))))).)---))..(((((..(((.....))).))))).. ( -31.90)
>DroPse_CAF1 1 86 + 1
----------------------CGCCUGCCCUGCUUCAAUGUGGCCAACAUCCAUGCCAAGAUCAAGGAGGGCCAGCAGCAUCCACUGAGUCACUCCUACAAGCGAUA
----------------------.((..(((((.(((.....((((..........)))).....))).)))))..))............(((.((......)).))). ( -22.20)
>DroSec_CAF1 1 83 + 1
----------------------CGCUUGCCCUGUUUUAGUGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA---GCAUCCGUUGAGUGAUUCCUACAAGCGGUA
----------------------.(((.(((((.(((.((..(((((........)))))..)).))).))))).)---))..(((((..(((.....))).))))).. ( -30.90)
>DroSim_CAF1 1 91 + 1
--------------CCCUCCAGCGCUUGCCCUGUUUUAGUGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA---GCAUCCGUUGAGUGAUUCCUACAAGCGGUA
--------------.........(((.(((((.(((.((..(((((........)))))..)).))).))))).)---))..(((((..(((.....))).))))).. ( -30.90)
>DroEre_CAF1 1 83 + 1
----------------------CGCCUGCCCUGUUUCAGCGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA---GCAUCCGUUGAGCGAUUCCUACAAGCGGUA
----------------------.((..(((((.(((.(((.(((((........))))).))).))).)))))..---))..(((((.((......))...))))).. ( -30.20)
>DroYak_CAF1 1 94 + 1
-----------UUACCCCGCAGCGCUUGCCCUGUUUUAGUGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA---GCAUCCGUUGAGUGAUUCCUACAAGCGGUA
-----------.....((((...(((.(((((.(((.((..(((((........)))))..)).))).))))).)---)).........(((.....)))..)))).. ( -32.40)
>consensus
______________________CGCUUGCCCUGUUUUAGUGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA___GCAUCCGUUGAGUGAUUCCUACAAGCGGUA
.......................((..(((((.(((.....(((((........))))).....))).))))).....))..(((((.((......))...))))).. (-22.33 = -22.72 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:44 2006