Locus 8423

Sequence ID X_DroMel_CAF1
Location 20,905,274 – 20,905,370
Length 96
Max. P 0.733344
window13840

overview

Window 0

Location 20,905,274 – 20,905,370
Length 96
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 76.94
Mean single sequence MFE -34.20
Consensus MFE -22.48
Energy contribution -22.43
Covariance contribution -0.05
Combinations/Pair 1.50
Mean z-score -1.36
Structure conservation index 0.66
SVM decision value 0.43
SVM RNA-class probability 0.733344
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20905274 96 + 22224390
UGGUGCUACCGAUCCGCAGGGAGGC---AUCAGCAACAUGACCACCGUCAACGGGGGUUACCUGUGGCUCAUCACACCUGUUGCAGCCAGGUUAGUAUG
..((((((..((.(((((((...((---....))....(((((.(((....))).)))))))))))).)).....(((((.......))))))))))). ( -35.10)
>DroGri_CAF1 13856 93 + 1
UG---UCCUGAAUGGUCAAAGCGGA---UUCAAUAACAUGGCCAACGUUGGCGGCGGUUACCUGUGGCUGUUGACACCUGUCGCGGCUAGGUGGGUACA
.(---((((.(((.(((........---..((......))((((....))))))).)))((((..((((((.(((....)))))))))))))))).)). ( -26.70)
>DroSec_CAF1 24485 96 + 1
UGGUGCUCCCGAUCCGCAGGGAGGC---AUCAGCAACAUGACCACCGUCAACGGGGGUUACCUGUGGCUCAUCACACCUGUUGCAGCCAGGUUAGUAUG
((((((((((........)))).))---))))(((((((((((.(((....))).)))))..(((((....)))))..))))))............... ( -35.10)
>DroEre_CAF1 17775 93 + 1
UGGUGCUCCCGAUCCGCAGGGAGGC---AUCAGCAAUAUGACCACCGUCAACGGUGGUUACUUGUGGCUCAUCACACCUGUUGCAGCCAGGUUAGU---
((((((((((........)))).))---))))(((((((((((((((....)))))))))..(((((....)))))..))))))............--- ( -38.00)
>DroYak_CAF1 21748 99 + 1
UGGUGCUCCUGAUCCGCAGGGAGGCAAUAUCAGCAAUAUGACCACCGUCAACGGUGGUUACCUGUGGCUCAUCACACCUGUUGCAGCCAGGUUAGUAUG
..(((((..(((.(((((((...((.......))....(((((((((....)))))))))))))))).)))....(((((.......))))).))))). ( -38.10)
>DroAna_CAF1 16140 94 + 1
GGGCGUGCCCGAUCAUCAGGGCGGU---AUCAACACUAUAGCCAAUACCAGUGGAGGCUACCUGUGGCUACUCACACCCGUGGCAGCCAGGUAAGUC--
.(((..((((........))))(((---......)))...)))..((((..(((..(((((..(((........)))..)))))..)))))))....-- ( -32.20)
>consensus
UGGUGCUCCCGAUCCGCAGGGAGGC___AUCAGCAACAUGACCACCGUCAACGGGGGUUACCUGUGGCUCAUCACACCUGUUGCAGCCAGGUUAGUAUG
((((.(((((........))))).........(((((((((((.(((....))).)))))...(((........))).)))))).)))).......... (-22.48 = -22.43 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:40 2006