| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,888,521 – 20,888,632 |
| Length | 111 |
| Max. P | 0.552886 |
| Location | 20,888,521 – 20,888,632 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.03 |
| Mean single sequence MFE | -14.07 |
| Consensus MFE | -3.46 |
| Energy contribution | -3.26 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20888521 111 + 22224390 -AAAACUAUUCAAUUAAACCCGUAGUAAUAUACUUGUAUUCCAUGAAGAUAA-AGAAACCAAUUAUUUCACAAAGAAAACACAAAA---ACAAGUAGGAAACUUACUUACA----UUGCA -....................(((((((..(((((((..((......))...-............((((.....))))........---)))))))(....))))).))).----..... ( -11.30) >DroSec_CAF1 8306 108 + 1 UAAAAUUAUUUAAUUAAACCCGUACCAAUAUACUUGUACCCCAUAAAGAUAA-AGAAGCCAAUUAUUUCACAAAGGAAACACAAAA---ACAAGUAGGAAA----CUUACA----UGGCA .....................((((..........)))).............-....((((.............(....)......---....((((....----).))).----)))). ( -13.00) >DroSim_CAF1 9332 111 + 1 UAAAACUAUUUAAUUAAACCCGUACCAAUAUACUUGUACCCCAUAAAGAUA--AGAAACCAAUUAUUUCACAAAGGAAACACAAAA---ACAAGUAGGAAACAUACUUACA----UGGCA ...................((((.......(((((((.........(((((--(........))))))......(....)......---)))))))(....)........)----))).. ( -14.00) >DroEre_CAF1 2541 113 + 1 UAAAACUAUUUAAUUAAAACCGUGCUAAUAUACUUGUAUCCCACG---GUAAAAAAAAGCAAUUAUUUCAAAUAGAAAACGCAAAAAAAAGAAGUAGGAAACUUACUUACA----UGGCA .....((((((.......((((((...((((....))))..))))---))......((....)).....)))))).....((.........((((((....).)))))...----..)). ( -17.24) >DroYak_CAF1 9375 111 + 1 UAAAACCAUUUAAUUAAAACCGUGCUUAUAUACUAGUAUCCCACG---GUAAA---AACCAACUAUUUUCAAAAGAAAAUACAAAA---ACAUGUAGGAAACUCACUAACAACACUAGCA ..................((((((...((((....))))..))))---))...---.......(((((((....))))))).....---...((.((....))))............... ( -14.80) >consensus UAAAACUAUUUAAUUAAACCCGUACUAAUAUACUUGUAUCCCAUGAAGAUAA_AGAAACCAAUUAUUUCACAAAGAAAACACAAAA___ACAAGUAGGAAACUUACUUACA____UGGCA .....................((..........................................((((.....))))...............(((((.......))))).......)). ( -3.46 = -3.26 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:26 2006