| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,816,425 – 20,816,539 |
| Length | 114 |
| Max. P | 0.882491 |
| Location | 20,816,425 – 20,816,539 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.47 |
| Mean single sequence MFE | -39.20 |
| Consensus MFE | -31.77 |
| Energy contribution | -32.00 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20816425 114 - 22224390 UUCUUC------UUGGGUGUUGCAAGUAUAUGCUGCCAUCCUUAAGUGAGGGAGUCCCUUUUUUUUGGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUAGGAGUGGGAACGACCGAAA ((((((------(((((((((((((((((((((..(((.((..(((.(((((...))))).)))..)))))..))))))))))))........)))))))))))).((......))))). ( -43.30) >DroEre_CAF1 7475 119 - 1 UUCUUCUCCAUUUUGGGUGUUGCAAGCUUAUGGUGCCUUCCUUGAGCGAGGGUGUCCCUUUUUU-UGGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUUGGAUUGGCAACGACCGAAA ..........((((((.((((((..(((((.((......)).))))).((((((((...((...-(((..(((......)))..)))...)).))))))))......)))))).)))))) ( -39.40) >DroYak_CAF1 12139 119 - 1 UUCUUCUCUACUUUGGGUGUUGCAAGUUUAUGCUGCCUUUCUUGAGUGAGGAUGUUCCUUUUUU-UUGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUAGGAUUGGAAACGACCGAAA ...(((.......((((((((((((((.(((((.((((..(..(((.((((.....)))).)))-..).))))))))).))))))........))))))))((.(((....)))))))). ( -34.90) >consensus UUCUUCUC_A_UUUGGGUGUUGCAAGUUUAUGCUGCCUUCCUUGAGUGAGGGUGUCCCUUUUUU_UGGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUAGGAUUGGAAACGACCGAAA (((..........((((((((((((((.(((((.(((..((..(((.(((((...))))).)))..))..)))))))).))))))........))))))))((.(((....)))))))). (-31.77 = -32.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:42 2006