Locus 8363

Sequence ID X_DroMel_CAF1
Location 20,764,231 – 20,764,331
Length 100
Max. P 0.874733
window13734

overview

Window 4

Location 20,764,231 – 20,764,331
Length 100
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 79.29
Mean single sequence MFE -19.75
Consensus MFE -13.72
Energy contribution -13.72
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.69
SVM decision value 0.89
SVM RNA-class probability 0.874733
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20764231 100 + 22224390
AAUUUUAAAACCCACAGCUGCGACCGCUUCCUGCGGCAAAAGUAGCACCAACCGACGACACUUCCCAAUAUACACAGAUGUAU----GUACU--UACACAUGUCUG
................(((((..((((.....)))).....)))))............................(((((((.(----((...--.))).))))))) ( -20.90)
>DroVir_CAF1 105821 92 + 1
AAUUUUAAAACCCACAGCUGCGACCGCUUCCUGCGGCAAAAGUAGCAUC------CCACACUUCAAUACGAAUGCG----AAU----ACACACACGAACACGUAUG
................(((((..((((.....)))).....)))))...------..........(((((....((----...----.......))....))))). ( -17.10)
>DroPse_CAF1 111360 96 + 1
AAUUUUAAAACCCACAGCUGCGACCGCUUCCUGCGGCAAAAGUAGCACCAACCGACGACACUUCCCCCCACACACAGCU--------GUACU--UACACUUGUCUG
.............(((((((.(.((((.....))))...((((..(..........)..)))).........).)))))--------))...--............ ( -17.70)
>DroGri_CAF1 103086 100 + 1
AAUUUUAAAACCCACAGCUGCGACCGCUUCCUGCGGCAAUAGUAGCUUC------CCACACUUCACUGCAAAUACGGCAGAAUAUAUAUUCUCCUGCAUACGUUUG
.......((((....((((((..((((.....)))).....))))))..------...........((((.....((.(((((....)))))))))))...)))). ( -21.50)
>DroSec_CAF1 83444 100 + 1
AAUUUUAAAACCCACAGCUGCGACCGCUUCCUGCGGCAAAAGUAGCACCAACCGACGACACUUCCCAAUAUACAAAGAUGUAU----GUACU--UACACAUGUCUG
................(((((..((((.....)))).....)))))..........((((.......(((((((....)))))----))...--......)))).. ( -20.39)
>DroAna_CAF1 26805 100 + 1
AAUUUUAAAACCCACAGCUGCGACCGCUUCCUGCGGCAAAAGUAGCACCAACCGACGACACUUCCCAAUAUACACAGAUGUAU----GUACU--UACACAUGUCUG
................(((((..((((.....)))).....)))))............................(((((((.(----((...--.))).))))))) ( -20.90)
>consensus
AAUUUUAAAACCCACAGCUGCGACCGCUUCCUGCGGCAAAAGUAGCACCAACCGACGACACUUCCCAACAUACACAGAUGUAU____GUACU__UACACAUGUCUG
................(((((..((((.....)))).....)))))............................................................ (-13.72 = -13.72 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:06 2006