Locus 833

Sequence ID X_DroMel_CAF1
Location 2,326,314 – 2,326,410
Length 96
Max. P 0.870936
window1347

overview

Window 7

Location 2,326,314 – 2,326,410
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 89.44
Mean single sequence MFE -19.00
Consensus MFE -18.16
Energy contribution -17.95
Covariance contribution -0.21
Combinations/Pair 1.15
Mean z-score -1.69
Structure conservation index 0.96
SVM decision value 0.87
SVM RNA-class probability 0.870936
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2326314 96 + 22224390
AAGUUGUCUUCUUUCUUCUCUUUUGUUGUAAUGUAAUUGAAUUCUUCUCUUCUCUUACAAUUUUGAAUUUGCUUGAUCGGGAGGAGGCCACUGUAU
.(((.(((((((..(................(((((..(((........)))..)))))...(..(......)..)..)..))))))).))).... ( -17.60)
>DroSec_CAF1 24527 92 + 1
AAGUUGUCUUCUCUCUUCUCUU----UGAAUCGUAAUUGAAAUCUUCUCUUCUCUUACAGUUUUGAAUUUGAUUGAUCGGGAGAGGGCCACUCUAU
.(((.((((((((((...((..----.((((.((((..(((........)))..)))).)))).))....((....)))))))))))).))).... ( -21.00)
>DroSim_CAF1 27056 92 + 1
AAGUUGUCUUUUCUCUUCUCUU----UGAAUCGUAAUUGAAAUCUUCUCUUCUCUUACAGUUUUGAAUUUGAUUGAUCGGGAGAGGGCCACUCUAU
.(((.((((((((((...((..----.((((.((((..(((........)))..)))).)))).))....((....)))))))))))).))).... ( -18.40)
>consensus
AAGUUGUCUUCUCUCUUCUCUU____UGAAUCGUAAUUGAAAUCUUCUCUUCUCUUACAGUUUUGAAUUUGAUUGAUCGGGAGAGGGCCACUCUAU
.(((.((((((((((.((.........((((.((((..(((........)))..)))).))))...........))..)))))))))).))).... (-18.16 = -17.95 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:53 2006