Locus 8318

Sequence ID X_DroMel_CAF1
Location 20,665,464 – 20,665,574
Length 110
Max. P 0.628504
window13664

overview

Window 4

Location 20,665,464 – 20,665,574
Length 110
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 90.06
Mean single sequence MFE -18.98
Consensus MFE -16.31
Energy contribution -16.12
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -1.46
Structure conservation index 0.86
SVM decision value 0.19
SVM RNA-class probability 0.628504
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20665464 110 + 22224390
ACAUGCAAAUAUCUCAGCGCUCCUGUCAGUUUUUCACAGUGGGGACACUCGCUCAUCAGAAAG---------AAACAGCAACAAAAAAAUAAGAAAAAAUGAGAAAAACCCAGGAAAAA
....((..........))..(((((...(((((((..((((....)))).(((..((.....)---------)...))).......................))))))).))))).... ( -21.40)
>DroSec_CAF1 67100 107 + 1
ACAUGCAAAUAUCUCAGCUCUCCUGUCACUUUUUCACAGUGGGGACACUCGCUCAUCAGAAAG---------AAACAGCAACGAAA-UAUAA--AAAAAGGAGGAAAACCCAGGAAAAA
....................(((((....((((((..((((....)))).(((..((.....)---------)...))).......-.....--......))))))....))))).... ( -18.30)
>DroSim_CAF1 44569 109 + 1
ACAUGCAAAUAUCUCAGCUCUCCUGUCACUUUUUCACAGUGGGGACACUCGCUCAUCAGAAAG---------AAACAGCAACGAAA-UAUAAGAAAAAAGGAGGAAAACCCAGGAAAAA
....................(((((((..((((((..((((....)))).(((..((.....)---------)...))).......-.....))))))..))((....))))))).... ( -19.90)
>DroEre_CAF1 62759 118 + 1
ACAUGCAAAUAUCUCAGCUCUCCUGUCACUUUUUCACUGUGGGGACACUCGCUCAUCAGAAAAAAAAGAAAAAAACAGCAUCAAAA-AAUAAGAAAAUAGGAGGAAAACCCAGGAAAAA
....................(((((((...(((((...(((....)))..(((.......................))).......-.....)))))...))((....))))))).... ( -16.30)
>consensus
ACAUGCAAAUAUCUCAGCUCUCCUGUCACUUUUUCACAGUGGGGACACUCGCUCAUCAGAAAG_________AAACAGCAACAAAA_AAUAAGAAAAAAGGAGGAAAACCCAGGAAAAA
....................(((((....((((((...(((....)))..(((.......................))).....................))))))....))))).... (-16.31 = -16.12 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:04 2006