Locus 8307

Sequence ID X_DroMel_CAF1
Location 20,658,694 – 20,658,796
Length 102
Max. P 0.999013
window13643

overview

Window 3

Location 20,658,694 – 20,658,796
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 93.63
Mean single sequence MFE -31.88
Consensus MFE -28.66
Energy contribution -28.82
Covariance contribution 0.16
Combinations/Pair 1.10
Mean z-score -2.24
Structure conservation index 0.90
SVM decision value 3.33
SVM RNA-class probability 0.999013
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20658694 102 - 22224390
UUGUUUGGGGACUUGCCAUAUUUUUAUGGACCCUGUGCACGCUUGCGUUUUGCAGUGGCUCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGCGCGGA
......((((.....(((((....))))).))))((((.((((.((.....)))))).........(((((((.((((....))))..)))))))))))... ( -32.70)
>DroSec_CAF1 60523 102 - 1
UUGUUUUGGGACUUGCCAUAUUUUUAUGGACCCUGUGCACGCUUGCUUUUUGCAGUGGCUCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGCCGCUGA
.(((...(((.....(((((....))))).)))...))).............(((((((........((((((.((((....))))..))))))))))))). ( -31.90)
>DroSim_CAF1 37892 102 - 1
UUGUUUUGGGACUUGCCAUAUUUUUAUGGACCCUGUGCACGCUUGCUUUUUGCAGUGGCUCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGCGCUGA
.......(((.....(((((....))))).))).((((.((((.((.....)))))).........(((((((.((((....))))..)))))))))))... ( -31.80)
>DroEre_CAF1 56174 97 - 1
UUGUUUUGGGACUUGCCGUAUUUUUAUGGACCCUGUGCACGCUGGCUUUUUGCAGUGGCGCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGC-----
.......(((.....(((((....))))).))).((((.(((((.(.....)))))))))).....(((((((.((((....))))..)))))))..----- ( -32.00)
>DroYak_CAF1 57424 102 - 1
UUGUUUUGGGACUGGCCAUAUUUUUAUGGACUCUGUGCACGCUCGCUUUUUGCAGUGGCUCUCAAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGCACUGA
.((((((((((..(((((((....))))).))....((.((((.((.....)))))))))))))))(((((((.((((....))))..)))))))))).... ( -31.00)
>consensus
UUGUUUUGGGACUUGCCAUAUUUUUAUGGACCCUGUGCACGCUUGCUUUUUGCAGUGGCUCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGCGCUGA
.......(((.....(((((....))))).))).((((.((((.((.....)))))).........(((((((.((((....))))..)))))))))))... (-28.66 = -28.82 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:42 2006