Locus 8268

Sequence ID X_DroMel_CAF1
Location 20,555,516 – 20,555,620
Length 104
Max. P 0.861001
window13577

overview

Window 7

Location 20,555,516 – 20,555,620
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 84.62
Mean single sequence MFE -13.77
Consensus MFE -12.32
Energy contribution -12.77
Covariance contribution 0.45
Combinations/Pair 1.08
Mean z-score -1.72
Structure conservation index 0.89
SVM decision value 0.83
SVM RNA-class probability 0.861001
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20555516 104 + 22224390
ACGUGCAGUCUGAUUAAAAUAUUUGCCUGGAUGCCUUGUUACUACCACAUAUUUUACCAAUUUUUCCCUUCUUACGACUAUGAUACAUUAUAUUAUCAUUUUCC
.(((.(((.(.(((......))).).))).)))..........................................((..((((((........))))))..)). (  -9.70)
>DroSec_CAF1 123093 92 + 1
ACGUGCAGUCAGAUUAAAAUAUUUGACUGGACGCCUUGUUACUACCACAUAUUUGACCAAUAUUUCCUUUACUACUACUAUGAU------------CAUUUUCC
.(((.(((((((((......))))))))).)))...................................................------------........ ( -15.80)
>DroSim_CAF1 135865 104 + 1
ACGUGCAGUCAGAUUAAAAUAUUUGACUGGACGCCUUGUUACUACCACAUAUUUCACCAAUUUUUUCUUUACUACUACUAUGAUACAUUAUAUUCUCAUUAUCC
.(((.(((((((((......))))))))).)))....................................................................... ( -15.80)
>consensus
ACGUGCAGUCAGAUUAAAAUAUUUGACUGGACGCCUUGUUACUACCACAUAUUUCACCAAUUUUUCCUUUACUACUACUAUGAUACAUUAUAUU_UCAUUUUCC
.(((.(((((((((......))))))))).)))....................................................................... (-12.32 = -12.77 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:44 2006