Locus 8267

Sequence ID X_DroMel_CAF1
Location 20,549,296 – 20,549,391
Length 95
Max. P 0.860951
window13576

overview

Window 6

Location 20,549,296 – 20,549,391
Length 95
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 84.77
Mean single sequence MFE -23.38
Consensus MFE -15.64
Energy contribution -18.08
Covariance contribution 2.44
Combinations/Pair 1.14
Mean z-score -2.37
Structure conservation index 0.67
SVM decision value 0.83
SVM RNA-class probability 0.860951
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20549296 95 + 22224390
-----GUUUCUCAUAAGUGAGUGCAACUCUCGUCGAAAAUUGAGUAAUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA
-----....((((....))))(((.(((((.(((.(......(....)......).)))))))).((((((....))))))...........)))..... ( -20.20)
>DroSec_CAF1 117005 95 + 1
-----GUUUCCCAUGAGUCAGUGCAACUCUCGUCAAAAAUUGGGGAAUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA
-----...............((((.(((((.(((.......(((.....)))....)))))))).((((((....))))))...........)))).... ( -23.70)
>DroSim_CAF1 129690 95 + 1
-----GUGUCUCAUGAGUCAGUGCAACUCUCGUCAAAAAUUGGGGAAUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA
-----.((.((....)).))((((.(((((.(((.......(((.....)))....)))))))).((((((....))))))...........)))).... ( -24.70)
>DroEre_CAF1 116061 100 + 1
ACCAUGUUUGACUUGAAGUAGUGCAACUCCUGUCAAACAUUUCAGCAUACCUUGUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA
...(((((((((..((.((......))))..)))))))))....((.(((.(((....))).)))((((((....))))))...........))...... ( -23.30)
>DroYak_CAF1 118520 100 + 1
AGCUUGCUUGGUUUCAAGUAGUGCAACUCUCGCCAAACAUUGUGGGUUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA
....((((((....))))))((((.(((((..(((........((....))...)))..))))).((((((....))))))...........)))).... ( -25.00)
>consensus
_____GUUUCUCAUGAGUCAGUGCAACUCUCGUCAAAAAUUGGGGAAUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA
....................((((.(((((.(((.......((((.....))))..)))))))).((((((....))))))...........)))).... (-15.64 = -18.08 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:43 2006