Locus 8263

Sequence ID X_DroMel_CAF1
Location 20,542,290 – 20,542,382
Length 92
Max. P 0.893729
window13572

overview

Window 2

Location 20,542,290 – 20,542,382
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 78.23
Mean single sequence MFE -28.05
Consensus MFE -18.25
Energy contribution -19.25
Covariance contribution 1.00
Combinations/Pair 1.15
Mean z-score -1.85
Structure conservation index 0.65
SVM decision value 0.98
SVM RNA-class probability 0.893729
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20542290 92 + 22224390
CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA--CGCCAUCCCCGCAAAGCCCAAAAAAGCAAAGG---GCCA
.........((.(((((..(((((((.......)))))))(((((.....))))).--))))).)).......((((...........))---)).. ( -30.00)
>DroPse_CAF1 137702 73 + 1
CAGAAAAAUGGUUGGCAAUGUCGUUGGCAACCACAGUGGCAGCGGC---AGCGGCA---GCCACCCCCGAAAAAA--------UGAA----------
........((((((.(..((((((((.((.......)).)))))))---)..).))---))))............--------....---------- ( -24.20)
>DroSim_CAF1 122270 91 + 1
CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA--GGCCAUCCCCGCAAAGCCCAA-AAAGCAAAGG---GCCA
........((((((.((((...)))).))))))..((((((((((.....))))).--.))))).........((((..-........))---)).. ( -30.00)
>DroEre_CAF1 108758 92 + 1
CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA--GGCCAUCCCCGAAAAGCCCAAAAAAGCAAAGG---GCCA
........((((((.((((...)))).))))))..((((((((((.....))))).--.))))).........((((...........))---)).. ( -29.90)
>DroWil_CAF1 143516 88 + 1
CAGAAAAAUGGUUGGCAAUGUCGUUGGCAACCACAGCGGCAGC---AUCGUCAGCAACGGCAACGUCAGCAACCCCCAGAAAAAUAAAGG---A---
........(((.((((..((((((((.......))))))))..---...))))((.(((....)))..)).....)))............---.--- ( -22.10)
>DroYak_CAF1 111861 95 + 1
CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA--GGCCAUCCCCGAAAAGCCCAAAAAAGCAAAGGGCGGCCA
........((((((.((((...)))).)))))).......(((((.....))))).--((((.((...))...((((...........)))))))). ( -32.10)
>consensus
CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA__GGCCAUCCCCGAAAAGCCCAAAAAAGCAAAGG___GCCA
........((((((.((((...)))).))))))..((((((((((.....)))))....)))))................................. (-18.25 = -19.25 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:40 2006