Locus 8232

Sequence ID X_DroMel_CAF1
Location 20,441,765 – 20,441,867
Length 102
Max. P 0.949614
window13522

overview

Window 2

Location 20,441,765 – 20,441,867
Length 102
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 84.70
Mean single sequence MFE -28.13
Consensus MFE -20.67
Energy contribution -20.98
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -2.40
Structure conservation index 0.73
SVM decision value 1.39
SVM RNA-class probability 0.949614
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20441765 102 - 22224390
UUUCGUACGCUAGUUUUGUGAGCUCCACUGUACAGUUUGCAUAC----------------AUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU
....(((.(((((....((((((((((((....)))..((((((----------------....))))))........)).))))))).))))).))).................... ( -27.20)
>DroSec_CAF1 15336 102 - 1
CUGCGUAUGCUAGUUUUGUGACCUCCACUGUACACUUUGCAUAC----------------AUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU
....(((.(((((....((((...(((((........(((((((----------------....))))))).......))))).)))).))))).))).................... ( -26.66)
>DroEre_CAF1 13893 102 - 1
CUCCGUAUGCUAUUUUUGUGACCUCCACUGCACAGUUUGCAUGC----------------AUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU
.((((((.((((.....((((...(((((.((.((..(((((((----------------....)))))))..)).))))))).))))..)))).)))....)))............. ( -24.80)
>DroYak_CAF1 13617 116 - 1
--UCGUAUUCUAUUCCAGUGACCUCCACUGUGCAGCCUGCAUACAUACAUACAUAUGUACAUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU
--..((((((.((((((((((...(((((........((((((((((..(((....)))..)))))))))).......))))).))))...((....)).))))))....)))))).. ( -33.86)
>consensus
CUUCGUAUGCUAGUUUUGUGACCUCCACUGUACAGUUUGCAUAC________________AUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU
....(((..((((....((((...(((((........(((((((....................))))))).......))))).)))).))))..))).................... (-20.67 = -20.98 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:57 2006