Locus 8193

Sequence ID X_DroMel_CAF1
Location 20,361,262 – 20,361,354
Length 92
Max. P 0.647588
window13467

overview

Window 7

Location 20,361,262 – 20,361,354
Length 92
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 76.55
Mean single sequence MFE -27.58
Consensus MFE -9.83
Energy contribution -9.87
Covariance contribution 0.04
Combinations/Pair 1.16
Mean z-score -1.87
Structure conservation index 0.36
SVM decision value 0.24
SVM RNA-class probability 0.647588
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20361262 92 - 22224390
AUGUUUCAUUUGCUGGCAGUGCCGAGCAGAACAGAGCAGAA--GCCAAA--GCCUU------------UGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG---------A
.(((((..(((((((((...))).))))))...)))))...--......--(((((------------(....(((((.........))))).......))))))..---------. ( -22.60)
>DroSec_CAF1 8484 82 - 1
AUGUUUCAUUUGCUGGCAGUGC----------AGAGCAGAA--GCCAAA--GCCUU------------UGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG---------A
.(((((((((...(((((((((----------((.(((((.--((....--)).))------------)))))))))............)))))..)))))).))).---------. ( -23.30)
>DroSim_CAF1 8593 82 - 1
AUGUUUCAUUUGCUGGCAGUGC----------AGAGCAGAA--GCCAAA--GCCUU------------UGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG---------A
.(((((((((...(((((((((----------((.(((((.--((....--)).))------------)))))))))............)))))..)))))).))).---------. ( -23.30)
>DroEre_CAF1 8322 94 - 1
AUGUUUCAUUUGCCGGCAGAGC----------AGAGCAGAA--GCCAAA--GCCUUUGCCUUUGCCUUUGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG---------A
........((((((((((((((----------((((((((.--((....--)).)))).))))).))))))).(((((.........)))))..........)))))---------) ( -31.90)
>DroAna_CAF1 26433 102 - 1
AUGUUUCAUUUGGCGUGGGCGA---GGGGAAGGGGGCAGGGGGGCAUAAGGACCUC------------UGCCUGAAUUUUAACUUUCGAUGCUGAUAAUGAAGGCGGGACGACGGCA
...(((((((..((((.((.((---(..((((.(((((((((..(....)..))))------------)))))...))))..))))).))))..)..))))))((.(.....).)). ( -36.80)
>consensus
AUGUUUCAUUUGCUGGCAGUGC__________AGAGCAGAA__GCCAAA__GCCUU____________UGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG_________A
........((((((....................))))))............................(((((.(((((((.(.......).))).)))).)))))........... ( -9.83 =  -9.87 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:08 2006