Locus 8163

Sequence ID X_DroMel_CAF1
Location 20,312,088 – 20,312,191
Length 103
Max. P 0.634586
window13413

overview

Window 3

Location 20,312,088 – 20,312,191
Length 103
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 86.69
Mean single sequence MFE -20.37
Consensus MFE -17.74
Energy contribution -17.63
Covariance contribution -0.11
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.87
SVM decision value 0.21
SVM RNA-class probability 0.634586
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20312088 103 - 22224390
UCC-------CUCUCUCAUUGCCUCUCGCUCGUUCUUCCUUUCUAUCCGAAUCCCUCAGUCUUCGCUACUUUCGCAAUGUAACGACUUUUGCGGAGGAUGCGACAGAUAA
...-------............((.((((....((((((........((((..(....)..))))........((((.((....))..)))))))))).)))).)).... ( -19.90)
>DroEre_CAF1 36709 103 - 1
UCC-------CUCACUCAUCCCCUCUCGCUAGUUCUUCCUUUCUCGCCGAAUCCCUCAGACUUCUCUAUUUUCGCAAUGUAACGACUUUUGCGGAGGAUGCGACAGAUAA
...-------............((.((((....((((((.........(((......((....)).....)))((((.((....))..)))))))))).)))).)).... ( -18.80)
>DroYak_CAF1 36796 110 - 1
UCCCUUCUGCCUCUCUCAUUCCCUCACGCACGUUCUUCCAUUCCCCGCGAAUCCCUCAGACUUCUCUAUUUUCGCAAUGUAACGACUUUUGCGGAGGAUGCGACAGAUAA
.....((((....((.(((..((((.((((.(((.((.((((....(((((......((....)).....))))))))).)).)))...))))))))))).))))))... ( -22.40)
>consensus
UCC_______CUCUCUCAUUCCCUCUCGCUCGUUCUUCCUUUCUCCCCGAAUCCCUCAGACUUCUCUAUUUUCGCAAUGUAACGACUUUUGCGGAGGAUGCGACAGAUAA
......................((.((((....((((((.........(((......(((....)))...)))((((.((....))..)))))))))).)))).)).... (-17.74 = -17.63 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:19 2006