Locus 8159

Sequence ID X_DroMel_CAF1
Location 20,295,093 – 20,295,185
Length 92
Max. P 0.666420
window13409

overview

Window 9

Location 20,295,093 – 20,295,185
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 79.07
Mean single sequence MFE -12.30
Consensus MFE -7.83
Energy contribution -8.17
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.64
SVM decision value 0.28
SVM RNA-class probability 0.666420
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20295093 92 + 22224390
AAUAAAACCGAGCUGAAAGUAUAGAAAAGUAUCUAUAUUUCAACCAAAGAAUUUGUUUCACAUGGGAAAACAAGAAAACAAAUCGUGAGAAA
.............(((((.((((((......))))))))))).........(((((((..(.((......)).).)))))))((....)).. ( -13.10)
>DroSec_CAF1 24855 74 + 1
AAUAAAACCGUGAUGAAAGUAUAGAAAAGUAUCUAUAUUUCAAUCAAAGAAUUUGUUUCACUUGGCAUAACAAC------------------
.......(((((((..(((((((((......)))))))))..))))..(((.....)))...))).........------------------ ( -12.80)
>DroSim_CAF1 26117 74 + 1
AAUAAAACCGUGCUGAAAGUAUUGAAAAGUAUCUAUAUUUCAAUCAAAGAACUUGUUUCACAUGGCAUAACAAC------------------
.......(((((.(((((..(((((((.((....)).)))))))(((.....))))))))))))).........------------------ ( -11.00)
>consensus
AAUAAAACCGUGCUGAAAGUAUAGAAAAGUAUCUAUAUUUCAAUCAAAGAAUUUGUUUCACAUGGCAUAACAAC__________________
.......(((...(((((.((((((......)))))))))))......(((.....)))...)))........................... ( -7.83 =  -8.17 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:16 2006