| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,277,741 – 20,277,851 |
| Length | 110 |
| Max. P | 0.845288 |
| Location | 20,277,741 – 20,277,851 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 63.11 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -10.15 |
| Energy contribution | -11.60 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20277741 110 - 22224390 ---AGUUCUGUGGCAACAGGUGCACCAUUCACC---UGAACAGCUGAUGGAUCGGGAUUUAUUUAUCUGCAUAUAUCUCGAAAUAGCC--AUCCGCCACGCAAACUUCGUUUUCGAUU ---((((.((((((..((((((.......))))---)).......(((((.(((((((.(((........))).))))))).....))--))).))))))..))))(((....))).. ( -33.30) >DroSec_CAF1 7726 115 - 1 CCAAGUUCUGUGGCAACAGGUGAACCAUUCACC---UGACCAGCUGAUGGAUCGGGAUUAAUUUAUCUGCAUUUAUCCCGAAAUAUCCACAUCCACCAUGCAAACUUCGGUUUCAAUU ........(((((...(((((((.....)))))---)).(((.....))).(((((((.(((........))).))))))).....))))).......((.((((....))))))... ( -33.10) >DroSim_CAF1 10141 106 - 1 CCAAGUUCUGUGGCAACAGGUGAACCAUUCACC---UGAUCAGCUGAUGGAUCGGGAUUUAUUUAUUUGCAUAUAUCUCGAAAUAUU---------CAUGCAAACUUCGGUUUCAAUU (((((((.((((((..(((((((.....)))))---))....))).((((((((((((.(((........))).)))))))....))---------))))))))))).))........ ( -26.90) >DroEre_CAF1 2296 90 - 1 -CAAGUUCUGUGGCAACAGGUGAAUG----GGG---CGAUCAGCUGAU----------UCAUUUAUAUC--UAUGCCUCGG--------CAUCUGCCACACAAACUUCGGUUUUGAUA -.......(((((((..((((((((.----((.---(.....))).))----------)))))).....--.((((....)--------))).))))))).((((....))))..... ( -26.10) >DroYak_CAF1 2373 100 - 1 -CAAGUUCUGUGGCAACAGGUGAAUG----GGG---CGAUCAGCUGAUGGAUCGGGAUAUAUCUGUAUC--UAUACCUCGG--------CAUCCGCCACGCAAACUUCGGUUUUGAUA -........(((((....((((..((----(((---(((((........)))))((((((....)))))--)...))))).--------)))).)))))..((((....))))..... ( -29.00) >DroPer_CAF1 15960 96 - 1 UUUGGUUUUGGGAU--UGGGCUUG-G----GGAUGAUCAUCAGCUGAUGGAUCUGGAUUUAUC-------GUAUGUUCCGUAUU-------UCCGCUCCCCGAAAGU-UGUUCUAUUU ........((((((--.....(((-(----(((.(((((((....))).)))).(((..(((.-------(......).)))..-------)))..)))))))....-.))))))... ( -24.60) >consensus _CAAGUUCUGUGGCAACAGGUGAACC____ACC___UGAUCAGCUGAUGGAUCGGGAUUUAUUUAUAUG_AUAUAUCUCGAAAU______AUCCGCCACGCAAACUUCGGUUUCAAUU .........(((((..(((.((..................)).))).....(((((((.(((........))).))))))).............)))))..((((....))))..... (-10.15 = -11.60 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:11 2006