Locus 8154

Sequence ID X_DroMel_CAF1
Location 20,274,207 – 20,274,302
Length 95
Max. P 0.729356
window13401

overview

Window 1

Location 20,274,207 – 20,274,302
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 95.79
Mean single sequence MFE -34.40
Consensus MFE -33.05
Energy contribution -32.83
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.71
Structure conservation index 0.96
SVM decision value 0.42
SVM RNA-class probability 0.729356
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20274207 95 + 22224390
CAGCCGAUCUCGAAGCCGGUGGCGAUCUAGAAAACGAGGUAUUCGAGGACAUAUCGGACAUUUCAGAUCCCGGCGAUCUGGAGUUCGAUGAGCAG
..((.(.((((((((((.((..(......)...))..))).))))))).).((((((((..((((((((.....)))))))))))))))).)).. ( -31.70)
>DroSec_CAF1 3928 95 + 1
CGGCCGACCUCGAAGCCGGUGGCGAACUAGAAAACGAGGUGUUCGAGGACAUAUCGGACAUUUCAGAUCCCGGCGAUCUGGAGUUCGAUGAGCAG
..((...((((((((((.((..(......)...))..))).)))))))...((((((((..((((((((.....)))))))))))))))).)).. ( -34.00)
>DroSim_CAF1 4231 95 + 1
AGGCCGACCUCGAAGCCGGUGGCGAACUAGAAAACGAGGUGUUCGAGGACAUAUCGGACAUUUCAGAUCCCGGCGAUCUGGAGUUCGAUGAGCCG
.(((...((((((((((.((..(......)...))..))).)))))))...((((((((..((((((((.....)))))))))))))))).))). ( -37.50)
>consensus
CGGCCGACCUCGAAGCCGGUGGCGAACUAGAAAACGAGGUGUUCGAGGACAUAUCGGACAUUUCAGAUCCCGGCGAUCUGGAGUUCGAUGAGCAG
..((...((((((((((.((..(......)...))..))).)))))))...((((((((..((((((((.....)))))))))))))))).)).. (-33.05 = -32.83 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:09 2006