Locus 8148

Sequence ID X_DroMel_CAF1
Location 20,270,328 – 20,270,430
Length 102
Max. P 0.873884
window13392

overview

Window 2

Location 20,270,328 – 20,270,430
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 80.49
Mean single sequence MFE -34.47
Consensus MFE -24.19
Energy contribution -24.63
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -2.01
Structure conservation index 0.70
SVM decision value 0.88
SVM RNA-class probability 0.873884
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20270328 102 - 22224390
GAGCGACAGCUAGUGGAUUGCCUGGUUGCCUGGCUGUCGGUGGCGUGGCCAGGAUAUAAGCGUUGACCAGGAACCACUGCGAACGCAGAUACACUCACAGAU
..(((...((.(((((....(((((((.((((((((.((....))))))))))...........)))))))..)))))))...)))................ ( -38.20)
>DroSec_CAF1 600 83 - 1
GAGCGACGGCUAGUGU-------------------GUUGGUGGCGUGGCCAGGAUACGAACGCUGGCCAGGAACCACUGCGAACGCAGAUACACUCACAGAU
.(((....)))(((((-------------------((((((..(.(((((((..........))))))).).))))((((....)))))))))))....... ( -32.70)
>DroSim_CAF1 596 83 - 1
GAGCGACAGCUAGUGG-------------------GUUGGUGGCGUGGCCAGGAUACGAACGCUGGCCAGGAAGCACUGCGAACGCAGAUACACUCACAGAU
.(((....))).((((-------------------((.(((..(.(((((((..........))))))).)..)).((((....))))...))))))).... ( -32.50)
>consensus
GAGCGACAGCUAGUGG___________________GUUGGUGGCGUGGCCAGGAUACGAACGCUGGCCAGGAACCACUGCGAACGCAGAUACACUCACAGAU
.(((....)))((((.......................(((..(.(((((((..........))))))).).))).((((....))))...))))....... (-24.19 = -24.63 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:00 2006