| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,187,553 – 20,187,643 |
| Length | 90 |
| Max. P | 0.836927 |
| Location | 20,187,553 – 20,187,643 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 72.40 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -16.60 |
| Energy contribution | -16.85 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.836927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20187553 90 - 22224390 ACAUCCAUCCCUGGUCGUAAUCUGAGGUGGCCAACGUUAGCCACUUUGGCGAUGAGCAGCCUUUGUCCCCUUGGCAUACUGGCUGCACUG ....(((....)))((((...(..(((((((........)))))))..)..))))((((((..((((.....))))....)))))).... ( -32.40) >DroSec_CAF1 9231 76 - 1 ACAUCCAUUCCUGGUCAUAAUCUGAAGUGCCCAACGUUAGCCACUUUGGCGAUGAGCAGCCUUUGUCCCCUUGGCA-------------- ...........((.((((...(..(((((.(........).)))))..)..)))).))(((...........))).-------------- ( -17.00) >DroSim_CAF1 8823 88 - 1 ACAUCCAUCCCUGGUCAUAAUCUGAAGUGGCCAACGUUAGCCACUUUGGCGAUGAGCAGCCUUUGUCCCCUUGGCAUACU--CAGCACUG ...........((.((((...(..(((((((........)))))))..)..)))).))(((...........))).....--........ ( -24.10) >DroAna_CAF1 51431 78 - 1 AUCUCCGGCUCAAUCCGG-AACUGAAGUGGCCAACGCUAACCACUUUAGAGAUGAGCUGCCCUUAGCCAUUC-----------CGCAUUG ...(((((......))))-).(((((((((..........))))))))).((((.((((....)))))))).-----------....... ( -23.10) >consensus ACAUCCAUCCCUGGUCAUAAUCUGAAGUGGCCAACGUUAGCCACUUUGGCGAUGAGCAGCCUUUGUCCCCUUGGCA________GCACUG ..........(((.((((...((((((((((........))))))))))..)))).)))............................... (-16.60 = -16.85 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:02 2006