Locus 8097

Sequence ID X_DroMel_CAF1
Location 20,152,762 – 20,152,898
Length 136
Max. P 0.943419
window13290 window13291

overview

Window 0

Location 20,152,762 – 20,152,864
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 82.29
Mean single sequence MFE -26.27
Consensus MFE -15.92
Energy contribution -16.03
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.88
Structure conservation index 0.61
SVM decision value 1.08
SVM RNA-class probability 0.911867
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20152762 102 + 22224390
AAGGCAAUGGCAAUGGCAACGGCAACGGCAGCGGAACGGCUACGACUACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUA
...(((.(((((.((((..((....)).....(((((((((........)))(((((........)))))..))))))..)).))...))))).)))..... ( -30.10)
>DroSec_CAF1 7806 84 + 1
AAGGCAAUGGCAGUGGCAACG------------GAACGGC------UACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUA
...(((.(((((..(((...(------------(((((((------....))(((((........)))))..))))))..))).....))))).)))..... ( -27.10)
>DroYak_CAF1 5951 78 + 1
AAGGCAAUGGU------AACG------------GAACGGC------UACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUA
..((((.((((------...(------------(((((((------....))(((((........)))))..))))))..)).))...)))).......... ( -21.60)
>consensus
AAGGCAAUGGCA_UGGCAACG____________GAACGGC______UACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUA
...(((.(((((...................................(((..(((((........)))))..)))(((......))).))))).)))..... (-15.92 = -16.03 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 20,152,796 – 20,152,898
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 94.95
Mean single sequence MFE -24.73
Consensus MFE -21.40
Energy contribution -21.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.94
Structure conservation index 0.87
SVM decision value 1.33
SVM RNA-class probability 0.943419
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20152796 102 + 22224390
AACGGCUACGACUACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUAUUUUCAAACUUUGAUGAAAUAAUCAAGGUAAACA
....(((........))).((...((((((.(((((..((((((......))))))...))))).)))))).)).((((((((......))))))))..... ( -23.30)
>DroSec_CAF1 7828 96 + 1
AACGGC------UACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUAUUUUCAAACUUUGAUGAAAUAAUCAAGGUAAACA
....((------....)).((...((((((.(((((..((((((......))))))...))))).)))))).)).((((((((......))))))))..... ( -25.20)
>DroEre_CAF1 3412 92 + 1
----GC------UACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUAUUUUCAAACUUUGAUGAAAUAAUCAAGGUAAACA
----((------....)).((...((((((.(((((..((((((......))))))...))))).)))))).)).((((((((......))))))))..... ( -25.20)
>DroYak_CAF1 5967 96 + 1
AACGGC------UACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUAUUUUCAAACUUUGAUGAAAUAAUCAAGGUAAACA
....((------....)).((...((((((.(((((..((((((......))))))...))))).)))))).)).((((((((......))))))))..... ( -25.20)
>consensus
AACGGC______UACGGCAUGUAUAAAUAUCUACAUCACGUUCCAAGCUCGGAAUGCCAAUGUAAAUAUUUUCAAACUUUGAUGAAAUAAUCAAGGUAAACA
...................((...((((((.(((((..((((((......))))))...))))).)))))).)).((((((((......))))))))..... (-21.40 = -21.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:22 2006