Locus 8094

Sequence ID X_DroMel_CAF1
Location 20,150,454 – 20,150,574
Length 120
Max. P 0.984083
window13286

overview

Window 6

Location 20,150,454 – 20,150,574
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.17
Mean single sequence MFE -25.30
Consensus MFE -23.72
Energy contribution -24.12
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.94
SVM decision value 1.96
SVM RNA-class probability 0.984083
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20150454 120 + 22224390
AGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGUU
(((((..(((((....((((((..((..((((........))))..))..))))))...)))))(((((.......)))))...............(((((...))))))))))...... ( -26.10)
>DroSec_CAF1 5720 120 + 1
AGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAAAAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGUU
((((((........((((((((..((..((((........))))..))..))))))..(((.(((((.....))))))))...............))((((...))))))))))...... ( -24.80)
>DroSim_CAF1 10762 120 + 1
AGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGUU
(((((..(((((....((((((..((..((((........))))..))..))))))...)))))(((((.......)))))...............(((((...))))))))))...... ( -26.10)
>DroEre_CAF1 1525 120 + 1
UGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGCU
.((((..(((((....((((((..((..((((........))))..))..))))))...)))))(((((.......)))))...............(((((...)))))))))....... ( -25.60)
>DroYak_CAF1 3623 120 + 1
UGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCCCUGCCCUCCACUU
(((((((.........((((((..((..((((........))))..))..))))))......(((((.....))))))))))))...........(((.((........)).)))..... ( -23.90)
>consensus
AGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGUU
.((((..(((((....((((((..((..((((........))))..))..))))))...)))))(((((.......)))))...............(((((...)))))))))....... (-23.72 = -24.12 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:18 2006