Locus 8090

Sequence ID X_DroMel_CAF1
Location 20,144,012 – 20,144,114
Length 102
Max. P 0.690591
window13281

overview

Window 1

Location 20,144,012 – 20,144,114
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 90.20
Mean single sequence MFE -32.28
Consensus MFE -22.77
Energy contribution -23.15
Covariance contribution 0.38
Combinations/Pair 1.07
Mean z-score -2.21
Structure conservation index 0.71
SVM decision value 0.33
SVM RNA-class probability 0.690591
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20144012 102 + 22224390
GGCAUGUGGAUGUGAAUGUGGCACGUGUGUCUGUGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA
.((((((..((((((.((..((.((..(((..(..(((........)))..)..)))..)).))..)).))))))...))))))......(....)...... ( -34.70)
>DroSec_CAF1 45164 102 + 1
GGCAUGUGGAUGUGAAUGUGGCACGUGUGUCUGUGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA
.((((((..((((((.((..((.((..(((..(..(((........)))..)..)))..)).))..)).))))))...))))))......(....)...... ( -34.70)
>DroEre_CAF1 38596 85 + 1
GGCAUGUG--UGUGGAU---------------GGGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA
.((((((.--((((.((---------------(.(.(((..(((((.....)).)))..)))....)...))).))))))))))......(....)...... ( -22.90)
>DroYak_CAF1 25129 102 + 1
GGCAUGUGGAUGUGGAUGUGGCACGUGUGUCUGCGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA
.((((((..(((((..((..((.((..(((..((((((........))))))..)))..)).))..))..)))))...))))))......(....)...... ( -36.80)
>consensus
GGCAUGUGGAUGUGAAUGUGGCACGUGUGUCUGUGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA
.((((((..((((((....((((....)))).(((((((..(((((.....)).)))..))).))))..))))))...)))))).................. (-22.77 = -23.15 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:13 2006