| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,104,758 – 20,104,860 |
| Length | 102 |
| Max. P | 0.958093 |
| Location | 20,104,758 – 20,104,860 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.47 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -13.05 |
| Energy contribution | -13.73 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20104758 102 - 22224390 CCAUUAAACA-----CCAUAUA----UAUGUUGUAUGUGGCGUUUAUGUAGCUGCAACGUAGA--------GUAAAAAGCUGCAGAUUGCCAAA-UGUAAAACUCUGCAGUUUUGCUAUC ....(((((.-----(((((((----(.....)))))))).))))).((((((((........--------))).(((((((((((((((....-.))))...)))))))))))))))). ( -31.90) >DroSec_CAF1 14793 106 - 1 CCAUUAUACA-----CCAUAUACAUGUAUGUAGUAUGUGGUGUUUAUGUAGCUGCAACGUAGA--------GUAAAAAGCUGCAGAUUGCCAAA-UGUAAAACUCUGCAGUUUUGCUAUC .(((...(((-----((((((((.........)))))))))))..)))(((((((........--------))).(((((((((((((((....-.))))...))))))))))))))).. ( -34.30) >DroAna_CAF1 9804 111 - 1 CUAAUACAUAAAUACCCACACG----AGUGUUGUU-----CAUAUAUGCAUAUGCCAUGGAGUAUAUAUGCGGAAAAGGCUACAAAUUGUCAAAUUGUAAAACGCUGCAGUUUUGCUAUC ......((((.(((((((..((----.(((((((.-----...))).)))).))...))).)))).)))).......(((........))).....(((((((......))))))).... ( -19.00) >consensus CCAUUAAACA_____CCAUAUA____UAUGUUGUAUGUGGCGUUUAUGUAGCUGCAACGUAGA________GUAAAAAGCUGCAGAUUGCCAAA_UGUAAAACUCUGCAGUUUUGCUAUC .................((((......))))......(((((....(((((((........................)))))))...)))))....(((((((......))))))).... (-13.05 = -13.73 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:54 2006