Locus 801

Sequence ID X_DroMel_CAF1
Location 2,237,173 – 2,237,278
Length 105
Max. P 0.986289
window1298

overview

Window 8

Location 2,237,173 – 2,237,278
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.79
Mean single sequence MFE -43.95
Consensus MFE -40.83
Energy contribution -41.22
Covariance contribution 0.39
Combinations/Pair 1.06
Mean z-score -2.24
Structure conservation index 0.93
SVM decision value 2.04
SVM RNA-class probability 0.986289
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2237173 105 - 22224390
CACGAUGCCCGAGGCUGAUGUUCUGAAUUUGAUACGAUCGCAGGGCUCGUCCUUGACGUUGGAGAUAUUCAGAAGGUCAGGCGCGGGCGCCACAACAAUCACGU---C------------
...(.((((((.(.(((((.((((((((......(((.(((((((.....))))).))))).....)))))))).))))).).)))))).).............---.------------ ( -41.30)
>DroVir_CAF1 305 114 - 1
CACGAUGCCCGAGGCUGAUGUUCUGAAUUUGAUACGAUCGCAGGGCUCGUCCUUGACGUUGGAGAUAUUCAGAAGGUCAGGCGCGGGCGCCAACAUGGCCAGCAAUGCCGCCAA------
...(.((((((.(.(((((.((((((((......(((.(((((((.....))))).))))).....)))))))).))))).).)))))).)....((((((....))..)))).------ ( -47.00)
>DroPse_CAF1 416 114 - 1
CACGAUGCCCGAGGCUGAUGUUCUGAAUUUGAUACGAUCGCAGGGCUCGACCUUGACGUUGGAGAUAUUCAGAAGGUCAGGCGCGGGCGCCACCAUGGCCAUAGACACAGCCAC------
...(.((((((.(.(((((.((((((((......(((.(((((((.....))))).))))).....)))))))).))))).).)))))).)....((((..........)))).------ ( -45.50)
>DroWil_CAF1 351 107 - 1
CACGAUGCCCGAGGCUGAUGUUCUGAAUUUGAUACGAUCGCAGGGCUCGUCCUUGACGUUGGAGAUAUUCAGAAGGUCAGGAUCGGGUGCCAAUAUGGCCACACACC-------------
......((((((..(((((.((((((((......(((.(((((((.....))))).))))).....)))))))).)))))..))))))(((.....)))........------------- ( -41.90)
>DroMoj_CAF1 341 120 - 1
UACGAUGCCCGAGGCUGAUGUUCUGAAUUUGAUACGAUCGCAGGGCUCGUCCUUAACGUUGGAGAUAUUCAGAAGGUCAGGCGCGGGCGCCAACAUGGCCACCAAUGCCACCAAUGCCAC
......(((((.(.(((((.((((((((......(((.((.((((....))))...))))).....)))))))).))))).).)))))((.....((((.......)))).....))... ( -42.50)
>DroPer_CAF1 392 114 - 1
CACGAUGCCCGAGGCUGAUGUUCUGAAUUUGAUACGAUCGCAGGGCUCGACCUUGACGUUGGAGAUAUUCAGAAGGUCAGGCGCGGGCGCCACCAUGGCCAUAGACACAGCCAC------
...(.((((((.(.(((((.((((((((......(((.(((((((.....))))).))))).....)))))))).))))).).)))))).)....((((..........)))).------ ( -45.50)
>consensus
CACGAUGCCCGAGGCUGAUGUUCUGAAUUUGAUACGAUCGCAGGGCUCGUCCUUGACGUUGGAGAUAUUCAGAAGGUCAGGCGCGGGCGCCAACAUGGCCACAAACAC_GCCA_______
......(((((.(.(((((.((((((((......(((.(((((((.....))))).))))).....)))))))).))))).).)))))(((.....)))..................... (-40.83 = -41.22 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:08 2006