Locus 7998

Sequence ID X_DroMel_CAF1
Location 19,891,981 – 19,892,080
Length 99
Max. P 0.838223
window13132

overview

Window 2

Location 19,891,981 – 19,892,080
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 94.77
Mean single sequence MFE -33.66
Consensus MFE -27.81
Energy contribution -28.61
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.83
SVM decision value 0.74
SVM RNA-class probability 0.838223
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19891981 99 - 22224390
CUCGCCAUGGGGAGACGACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGGACCCCUAGG-GGAUGUGCAGCUAAAUCUUUUAAAAUACAUCUA
....((..((((......((((....))))....(((((((((....)).))))))).))))..))-(((((((..................))))))). ( -29.37)
>DroSec_CAF1 7034 99 - 1
CUCGCCCUGGGGAGCCGACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGGACCCCUGGG-GGAUGUGCAGCUAAAUCUUUUAAAAUACAUCUA
....(((.((((......((((....))))....(((((((((....)).))))))).)))).)))-(((((((..................))))))). ( -33.67)
>DroSim_CAF1 6483 99 - 1
CUCGCCCUGGGGAGCCGACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGGACCCCUGGG-GGAUGUGCAGCUAAAUCUUUUAAAAUACAUCUA
....(((.((((......((((....))))....(((((((((....)).))))))).)))).)))-(((((((..................))))))). ( -33.67)
>DroEre_CAF1 6315 99 - 1
GUCGCCCUGGGGAGCCCUCGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGCGCCCCUGGG-GGAUGUGAAGCUAAAUCUUUUAAAAUACAUCUA
....(((.((((.(((.(((((....))))).......((((....))))....))).)))).)))-((((((((((......))))......)))))). ( -34.90)
>DroYak_CAF1 6540 100 - 1
CUCCCCCUGGGGAGCCCACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGCACCCCUGGGGGGAAGUGCAGCUAAAUCUUUUAAAAUACAUCUA
.(((((((((((.(((..((((....))))........((((....))))....))).)))).))))))).............................. ( -36.70)
>consensus
CUCGCCCUGGGGAGCCGACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGGACCCCUGGG_GGAUGUGCAGCUAAAUCUUUUAAAAUACAUCUA
....(((.((((......((((....))))....(((((((((....)).))))))).)))).))).(((((((..................))))))). (-27.81 = -28.61 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:51 2006