Locus 7965

Sequence ID X_DroMel_CAF1
Location 19,851,707 – 19,851,801
Length 94
Max. P 0.623655
window13072

overview

Window 2

Location 19,851,707 – 19,851,801
Length 94
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -23.02
Consensus MFE -16.82
Energy contribution -17.64
Covariance contribution 0.81
Combinations/Pair 1.06
Mean z-score -1.60
Structure conservation index 0.73
SVM decision value 0.18
SVM RNA-class probability 0.623655
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19851707 94 + 22224390
CACAGCAGCUGCA-AAAUAUGCUGCUAAGGAUUGGCCGUCGUUUC---------CUUCUCGCUGAUCCUGCUCCUUACUGUUUAUAUCCUUAUUCGUGGUCUUU
(((((((((....-......)))))).(((((..((.........---------......))..)))))..........................)))...... ( -22.36)
>DroSec_CAF1 9450 94 + 1
CACAGCAGCUGCA-AAAUAUGCUGCUAAGGAUUGGCCGUCGUUUC---------CUACUCGCUGAUCCUGCUCCUUACUGUUUAUAUCCUUAUUCGUGGUCUUU
(((((((((....-......)))))).(((((..((.((......---------..))..))..)))))..........................)))...... ( -23.10)
>DroAna_CAF1 8765 92 + 1
CACAGCAGCUGCAUAAAAAUGCGGCUAGGGAUUGCUCAUCCUUUCGGCUCUGCUCCUUUCUCUGAUCCUGCGGC------------UCCUUAUUCGAGGUCUUU
....((((((((((....)))))))((((((..((....((....))....)).....))))))....)))(((------------..(......)..)))... ( -23.50)
>DroSim_CAF1 5603 94 + 1
CACAGCAGCUGCA-AAAUAUGCUGCUAAGGAUUGGCCGUCGUUUC---------CUACUCGCUGAUCCUGCUCCUUACUGUUUAUAUCCUUAUUCGUGGUCUUU
(((((((((....-......)))))).(((((..((.((......---------..))..))..)))))..........................)))...... ( -23.10)
>consensus
CACAGCAGCUGCA_AAAUAUGCUGCUAAGGAUUGGCCGUCGUUUC_________CUACUCGCUGAUCCUGCUCCUUACUGUUUAUAUCCUUAUUCGUGGUCUUU
(((((((((...........)))))).(((((((((........................)))))))))..........................)))...... (-16.82 = -17.64 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:58 2006