| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,811,133 – 19,811,225 |
| Length | 92 |
| Max. P | 0.738085 |
| Location | 19,811,133 – 19,811,225 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 85.49 |
| Mean single sequence MFE | -30.46 |
| Consensus MFE | -24.73 |
| Energy contribution | -24.40 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19811133 92 - 22224390 AUUAGCUGUGUUGUCCCGACCUCUUGACUGGACUCAACGGGGGUGGAGCUCCACCUGGAGCAGACUC----------UCAUUCCCACAUUCAUC------CAGACACU .......(((((((((.(.........).)))).....((((((((((((((....)))))....))----------.))))))).........------..))))). ( -27.60) >DroSec_CAF1 17040 108 - 1 AUUAGCUGUGUUGUCCCGACCUCUCGACUGGACUCAACUGGGGUGGAGCUCCACCUGGAGCAGACUCACUCCCACACCCACACCCACAUCCAUUUCCAGGCAGACACU .......(((((....(((....))).(((((......((((((((.(((((....))))).((.....))......)))).))))........)))))...))))). ( -32.04) >DroSim_CAF1 14110 108 - 1 AUUAGCUGUGUUGUCCCGACCUCUCGACUGGACUCAACUGGGGUGGAGCUCCACCUGGAGCAGACUCACUUCCACACCCAUACCCACAUCCAUUUCCAGGCAGACACU .......((((((((.(((....)))..((((......((((((((((((((....)))))((.....))))))).))))........))))......)))).)))). ( -31.74) >consensus AUUAGCUGUGUUGUCCCGACCUCUCGACUGGACUCAACUGGGGUGGAGCUCCACCUGGAGCAGACUCACU_CCACACCCAUACCCACAUCCAUUUCCAGGCAGACACU .......((((((((((((....)))...))))......(((((((.(((((....))))).(........).....)))).))).................))))). (-24.73 = -24.40 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:16 2006