Locus 791

Sequence ID X_DroMel_CAF1
Location 2,193,299 – 2,193,405
Length 106
Max. P 0.999872
window1282

overview

Window 2

Location 2,193,299 – 2,193,405
Length 106
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 67.34
Mean single sequence MFE -29.51
Consensus MFE -22.60
Energy contribution -23.27
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.77
SVM decision value 4.33
SVM RNA-class probability 0.999872
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2193299 106 + 22224390
AAGCCGCAAGUGGGGGGCGCCUCAGGUCCACCUCCCACUACAACCACCCAGUACACACACACACACCAUCCCCAGCCCC-CUCCCACCA-------------ACACUUCCCACGCGGCAG
..(((((.(((((((((.(((...)))...)))))))))...........((......))...................-.........-------------...........))))).. ( -27.90)
>DroSec_CAF1 6229 90 + 1
AAGCCGCAAGUGGGGGGCGCCUCAGGUCCAACUCCCACUACAACCGCGCAGUGCGAACC----------------CCCU-CCCCCACAG-------------UCACUUCCCACGCUGCAG
..((.((..(((((((((((....(((...............))))))).((....)).----------------....-))))))).(-------------(........)))).)).. ( -25.56)
>DroEre_CAF1 6332 119 + 1
AAGCCGCAAGUGGGGGGCGCCUCAGGUCUGCCUCCCACUACAAGCAC-CAGAACAGCCCAGCUCCCAGCCCCCAGUCCCCCAUCCGCCAAUCCCCCGAGCCCCCACUUCCCACGCGGCAG
..((((((((((((((((...((.(((((.............)).))-).))...)))).((((................................)))).))))))).....))))).. ( -35.07)
>consensus
AAGCCGCAAGUGGGGGGCGCCUCAGGUCCACCUCCCACUACAACCAC_CAGUACAAACC__C_C_C___CCCCAGCCCC_CACCCACCA_____________ACACUUCCCACGCGGCAG
..(((((.(((((((((.(((...)))...)))))))))...........(......).......................................................))))).. (-22.60 = -23.27 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:53 2006