Locus 7908

Sequence ID X_DroMel_CAF1
Location 19,697,431 – 19,697,524
Length 93
Max. P 0.603782
window12976

overview

Window 6

Location 19,697,431 – 19,697,524
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 81.91
Mean single sequence MFE -39.47
Consensus MFE -29.42
Energy contribution -30.48
Covariance contribution 1.06
Combinations/Pair 1.22
Mean z-score -1.41
Structure conservation index 0.75
SVM decision value 0.14
SVM RNA-class probability 0.603782
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19697431 93 - 22224390
CAGACGACCGGCUGCCGCUUAGCUGCAAGCUGGCGGCGAUUCUGGGCGUGAGGCAACUCAGCGCCAGGCGGCAGAA---UCUGUUGCGUGGCAUGA
.......((((.(((((((.(((.....))))))))))...))))((.((((....))))))((((.(((((((..---.))))))).)))).... ( -47.40)
>DroSec_CAF1 3912 93 - 1
CGGACGCCCGGCUACCGCUUAGCUGCAAGCUGGCGGCAAUUCUGGGCGUGAGGCAACUCAGCGCCAGGCGGCAGAA---CCUGUUGCGCGGCAUGA
...((((((((...(((((.(((.....)))))))).....))))))))(((....)))...(((..(((((((..---.)))))))..))).... ( -44.50)
>DroSim_CAF1 3082 93 - 1
CGGACGCCCGGCUACCGCUUAGCUGCAAGCUGGCGGCAAUCCUGGGCGUGAGGCAACUCAGCGCCAGGCGGCAGAA---CCUGUUGCGCGGCAUGA
...((((((((...(((((.(((.....)))))))).....))))))))(((....)))...(((..(((((((..---.)))))))..))).... ( -44.50)
>DroEre_CAF1 4188 93 - 1
CGGACACCCGGCUACCACUUAGCUGCAAGCUGGCGGCGAUUCUGGGCGUGAGGCAACUCAGCGCCAGGCGUCAGAU---CCUGUUGCGAAGUAUGA
(((....)))......((((.((.(((..((((((.(.......((((((((....)))).)))).).))))))..---..))).)).)))).... ( -34.80)
>DroYak_CAF1 1700 93 - 1
CAGACGAUCGGCUACCACUUAGCUGCAAGCUGGCGGCAAUUCUGGGCGUGAGGCAACUCAGCGUCAAGCGGCAGUU---ACUGUUGCAAAGCAUGA
(((.(...((((((.....))))))...))))...((.......((((((((....)))).))))..(((((((..---.)))))))...)).... ( -32.10)
>DroAna_CAF1 15499 93 - 1
AGGACGGCCAUCUGCCGCUGAGCAGCAAACUGGCGGCCAUCCUGAGUGUCCGGCAGCUCAGCAAGCGCCGGCAGGAGUUCCUUUCG---AGCCUGA
.((.(.((((..(((.((...)).)))...)))).))).(((((.....(((((.(((.....)))))))))))))((((.....)---))).... ( -33.50)
>consensus
CGGACGCCCGGCUACCGCUUAGCUGCAAGCUGGCGGCAAUUCUGGGCGUGAGGCAACUCAGCGCCAGGCGGCAGAA___CCUGUUGCGAAGCAUGA
....((.((((((...((......)).))))))))((.......((((((((....)))).))))..(((((((......)))))))...)).... (-29.42 = -30.48 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:33 2006