| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,607,894 – 19,607,992 |
| Length | 98 |
| Max. P | 0.717073 |
| Location | 19,607,894 – 19,607,992 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.49 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -14.48 |
| Energy contribution | -14.64 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19607894 98 + 22224390 GAU------CUACUGUCUUUCGAGGGUACGAAUGUAUCUACAAGAUACACAC--GCACACACCGGGACA------AACGGACACGA-----AGGUAGACAAUUUCUACCUGGAUA---CC .((------((.((((.(..((..(((.((..((((((.....))))))..)--).)).)..))..)..------.))))......-----(((((((.....))))))))))).---.. ( -26.90) >DroPse_CAF1 15953 106 + 1 GAU------CUACUGUCUUUUCAAGG--------UAUCUACAAGAUACACACAGGCACACACUCGCACACGGAUGCACGGAUACGAAACAGAGGUAGACAAUUUCUACCUGGACAACAAC ...------....(((((((((...(--------((((.....)))))......(((..(..........)..)))........))))...(((((((.....))))))))))))..... ( -21.90) >DroSec_CAF1 13722 98 + 1 GAU------CUACUGUCUUUCGAGGGUACGAAUGUAUCUACAAGAUACACAC--GCACACACUGGGACA------AACGGACACGA-----AGGUAGACAAUUUCUACCUGGAUA---CC .((------((..((((((((.((.((.((..((((((.....))))))..)--).))...)).)))..------...)))))...-----(((((((.....))))))))))).---.. ( -26.60) >DroAna_CAF1 16171 105 + 1 GAUCGACCCCUACUGUCUUUCCUUGGUAU--CUGUAUCUACAAGAUACACAC--ACUCGCACUCGCACA------CAU--CCACGAAAUUGAGGUAGACAAUUUCUACCUGGACA---AA .............((((((((..(((...--.((((((.....))))))...--....((....))...------...--))).)))....(((((((.....))))))))))))---.. ( -21.90) >DroPer_CAF1 16773 106 + 1 GAU------CUACUGUCUUUUCAAGG--------UAUCUACAAGAUACACACAAGCACACACUCGCACACGGAUGCACGGAUACGAAACAGAGGUAGACAAUUUCUACCUGGACAACAAC ...------....(((((((((...(--------((((.....)))))......(((..(..........)..)))........))))...(((((((.....))))))))))))..... ( -22.10) >consensus GAU______CUACUGUCUUUCCAAGGUA____UGUAUCUACAAGAUACACAC__GCACACACUCGCACA______CACGGACACGAAA__GAGGUAGACAAUUUCUACCUGGACA___AC .............(((((...............(((((.....)))))...........................................(((((((.....))))))))))))..... (-14.48 = -14.64 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:38 2006